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2024_Ruthe_SND
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2024_Ruthe_SND
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lucaruthe 61a852543a I added all my images from the thesis as PDFs il y a 1 semaine
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4Presentation 565a9fd388 I added a folder with data from ImageJ il y a 3 mois
Bilder_Luca_BA 61a852543a I added all my images from the thesis as PDFs il y a 1 semaine
Correlation_with_behavior e702eb74fb adjusted code and ran it again il y a 3 semaines
Final_Quantitative_output 78815df6e9 new posthoc statistics with dunnett instead of tukey il y a 2 semaines
Final_Quantitative_output_with_figures 136bb6c901 [DATALAD] Recorded changes il y a 3 semaines
ImageJ 61a852543a I added all my images from the thesis as PDFs il y a 1 semaine
MaskComparisons 9bcdec0ea4 added overlap percentage csv il y a 1 mois
Tract_Density_Map 3a7f02f1c4 temp il y a 2 mois
Tract_Density_Map_registered 0332ba78b3 imagJ il y a 2 mois
Tract_Mask_NIFTI c5875af414 added white matter mask il y a 3 semaines
Tract_Mask_registered dfaee6412d applied mask2mtpl to whitematter mask il y a 3 semaines
Tract_Mask_tt 8634e48d2c [DATALAD] Recorded changes il y a 1 mois
Viral_tracing_flipped 2e82796756 added viraltracin 2 mtpl space filp function il y a 2 mois
behavior_analysis 83bbe1278b merged behavior data with quantitaitve dti values and corrolated between them with corrections il y a 1 mois
del 2e7526154b I updated all tract masks and added the extrapyramidal tract masks as well as some variations of the CST and thalamocortical tracking. il y a 2 mois
figures b1629b4c36 deleted some files il y a 3 mois
C57BL6_mouse.iso_registerd.nii.gz 45782701c4 updated input and output il y a 4 mois
Overlap_metrics_of_VT_and_dwi_masks.csv 9bcdec0ea4 added overlap percentage csv il y a 1 mois
README.md a0f2377f45 I updated the READme file for Outputs il y a 3 mois
affineTrafo.txt 45782701c4 updated input and output il y a 4 mois

README.md

Outputs

  • Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
  • Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
  • affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • Nifti_Trakte_V2: These are the updated tracts (NV).
  • Tract_Density: This folder contains the density of each generated tract mask, saved from DSI-Studio.