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applied mask2mtpl to whitematter mask

arefks 2 weeks ago
parent
commit
dfaee6412d

+ 1 - 1
code/mask2MTPL.py

@@ -20,7 +20,7 @@ def main():
         os.makedirs(args.output)
 
     # List all flo images in the input folder
-    flo_images = [os.path.join(args.input, image) for image in os.listdir(args.input) if image.endswith(".nii")]
+    flo_images = [os.path.join(args.input, image) for image in os.listdir(args.input) if image.endswith(".nii") or image.endswith(".gz")]
 
     # Loop through flo images and perform resampling
     for flo_image in flo_images:

output/Tract_Mask_registered/CRuT_MOp-RN_contralesional_mirrored_registered.nii → output/Tract_Mask_registered/CRuT_MOp-RN_contralesional_mirrored_CCcut_registered.nii


output/Tract_Mask_registered/CRuT_MOp-RN_ipsilesional_registered.nii → output/Tract_Mask_registered/CRuT_MOp-RN_ipsilesional_CCcut_registered.nii


BIN
output/Tract_Mask_registered/White_matter_mask_registered.nii.gz