new posthoc statistics with dunnett instead of tukey

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_0_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_0
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0217
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 287943.914 0.000 1.000 -564359.700 564359.700
+merged_timepoint 0.003      0.001 3.541 0.000       0.001      0.004
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[1.0148833e-05]	Yes
+Stroke	0	14	[0.62813845]	No
+Stroke	0	21	[0.13735075]	No
+Stroke	0	28	[0.30667821]	No
+Stroke	0	7	[0.10502068]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.82407921]	No
+Sham	0	14	[0.02933757]	Yes
+Sham	0	21	[0.28398771]	No
+Sham	0	28	[0.53282137]	No
+Sham	0	7	[0.24098417]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00062066]	Yes
+Stroke	Sham	14	[0.25477953]	No
+Stroke	Sham	21	[0.65950977]	No
+Stroke	Sham	28	[0.91006599]	No
+Stroke	Sham	7	[0.00533932]	Yes
+Stroke	Sham	0	[0.94655799]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_1_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_1
+          Mixed Linear Model Regression Results
+==========================================================
+Model:              MixedLM  Dependent Variable:  Value   
+No. Observations:   361      Method:              REML    
+No. Groups:         2        Scale:               0.0161  
+Min. group size:    156      Log-Likelihood:      222.5752
+Max. group size:    205      Converged:           Yes     
+Mean group size:    180.5                                 
+----------------------------------------------------------
+                 Coef. Std.Err.   z    P>|z| [0.025 0.975]
+----------------------------------------------------------
+Intercept        1.102    0.022 50.186 0.000  1.059  1.145
+merged_timepoint 0.002    0.001  3.331 0.001  0.001  0.004
+Group Var        0.001    0.009                           
+==========================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.0035168]	Yes
+Stroke	0	14	[0.59537008]	No
+Stroke	0	21	[0.10292683]	No
+Stroke	0	28	[0.21916754]	No
+Stroke	0	7	[0.07920587]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.45437375]	No
+Sham	0	14	[0.01844924]	Yes
+Sham	0	21	[0.31804948]	No
+Sham	0	28	[0.25009086]	No
+Sham	0	7	[0.16721671]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00403565]	Yes
+Stroke	Sham	14	[0.29369269]	No
+Stroke	Sham	21	[0.86217643]	No
+Stroke	Sham	28	[0.87499294]	No
+Stroke	Sham	7	[0.00232509]	Yes
+Stroke	Sham	0	[0.99327941]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_2_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_2
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0129
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 221633.035 0.000 1.000 -434392.766 434392.766
+merged_timepoint 0.002      0.001 3.035 0.002       0.001      0.003
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.06465955]	No
+Stroke	0	14	[0.54707735]	No
+Stroke	0	21	[0.0950823]	No
+Stroke	0	28	[0.10233332]	No
+Stroke	0	7	[0.07500154]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.29828395]	No
+Sham	0	14	[0.02148957]	Yes
+Sham	0	21	[0.35400601]	No
+Sham	0	28	[0.23955294]	No
+Sham	0	7	[0.20334648]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.01392655]	Yes
+Stroke	Sham	14	[0.30395239]	No
+Stroke	Sham	21	[0.85671888]	No
+Stroke	Sham	28	[0.88758615]	No
+Stroke	Sham	7	[0.00199247]	Yes
+Stroke	Sham	0	[0.92970378]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_3_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_3
+          Mixed Linear Model Regression Results
+==========================================================
+Model:              MixedLM  Dependent Variable:  Value   
+No. Observations:   361      Method:              REML    
+No. Groups:         2        Scale:               0.0110  
+Min. group size:    156      Log-Likelihood:      291.3122
+Max. group size:    205      Converged:           Yes     
+Mean group size:    180.5                                 
+----------------------------------------------------------
+                 Coef. Std.Err.   z    P>|z| [0.025 0.975]
+----------------------------------------------------------
+Intercept        1.096    0.014 78.927 0.000  1.069  1.124
+merged_timepoint 0.002    0.001  2.937 0.003  0.001  0.003
+Group Var        0.000    0.004                           
+==========================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.20132422]	No
+Stroke	0	14	[0.52567312]	No
+Stroke	0	21	[0.05702374]	No
+Stroke	0	28	[0.03729407]	Yes
+Stroke	0	7	[0.04779558]	Yes
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.27260617]	No
+Sham	0	14	[0.03017912]	Yes
+Sham	0	21	[0.4170685]	No
+Sham	0	28	[0.24949144]	No
+Sham	0	7	[0.21079552]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.04120918]	Yes
+Stroke	Sham	14	[0.37230429]	No
+Stroke	Sham	21	[0.99450634]	No
+Stroke	Sham	28	[0.56985638]	No
+Stroke	Sham	7	[0.00149948]	Yes
+Stroke	Sham	0	[0.99311853]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_4_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_4
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0098
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 193867.989 0.000 1.000 -379974.277 379974.277
+merged_timepoint 0.002      0.001 3.278 0.001       0.001      0.003
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.35826224]	No
+Stroke	0	14	[0.48579913]	No
+Stroke	0	21	[0.01437863]	Yes
+Stroke	0	28	[0.00664551]	Yes
+Stroke	0	7	[0.0740465]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.30030485]	No
+Sham	0	14	[0.02827235]	Yes
+Sham	0	21	[0.41999602]	No
+Sham	0	28	[0.19021848]	No
+Sham	0	7	[0.15319941]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.09507782]	No
+Stroke	Sham	14	[0.36576993]	No
+Stroke	Sham	21	[0.81135811]	No
+Stroke	Sham	28	[0.28143792]	No
+Stroke	Sham	7	[0.00241132]	Yes
+Stroke	Sham	0	[0.8988312]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_cut_0_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_cut_0
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0263
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 317240.552 0.000 1.000 -621780.057 621780.057
+merged_timepoint 0.003      0.001 3.851 0.000       0.002      0.005
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[2.1024643e-06]	Yes
+Stroke	0	14	[0.7275022]	No
+Stroke	0	21	[0.15697634]	No
+Stroke	0	28	[0.20165111]	No
+Stroke	0	7	[0.08524625]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.99535534]	No
+Sham	0	14	[0.03642467]	Yes
+Sham	0	21	[0.37027385]	No
+Sham	0	28	[0.56852454]	No
+Sham	0	7	[0.35359719]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00059078]	Yes
+Stroke	Sham	14	[0.17042771]	No
+Stroke	Sham	21	[0.80578929]	No
+Stroke	Sham	28	[0.70315125]	No
+Stroke	Sham	7	[0.00727771]	Yes
+Stroke	Sham	0	[0.92376634]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_cut_1_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_cut_1
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0204
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 279448.631 0.000 1.000 -547709.252 547709.252
+merged_timepoint 0.003      0.001 4.047 0.000       0.002      0.005
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.0008486]	Yes
+Stroke	0	14	[0.58891212]	No
+Stroke	0	21	[0.05553739]	No
+Stroke	0	28	[0.06245822]	No
+Stroke	0	7	[0.08449665]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.61856652]	No
+Sham	0	14	[0.01479796]	Yes
+Sham	0	21	[0.36405381]	No
+Sham	0	28	[0.23891632]	No
+Sham	0	7	[0.22404347]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00261941]	Yes
+Stroke	Sham	14	[0.17767538]	No
+Stroke	Sham	21	[0.98368511]	No
+Stroke	Sham	28	[0.82726179]	No
+Stroke	Sham	7	[0.00235826]	Yes
+Stroke	Sham	0	[0.88449581]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_cut_2_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_cut_2
+          Mixed Linear Model Regression Results
+==========================================================
+Model:              MixedLM  Dependent Variable:  Value   
+No. Observations:   361      Method:              REML    
+No. Groups:         2        Scale:               0.0159  
+Min. group size:    156      Log-Likelihood:      225.1317
+Max. group size:    205      Converged:           Yes     
+Mean group size:    180.5                                 
+----------------------------------------------------------
+                 Coef. Std.Err.   z    P>|z| [0.025 0.975]
+----------------------------------------------------------
+Intercept        1.129    0.020 55.982 0.000  1.089  1.168
+merged_timepoint 0.002    0.001  3.628 0.000  0.001  0.004
+Group Var        0.001    0.008                           
+==========================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.02763915]	Yes
+Stroke	0	14	[0.54246816]	No
+Stroke	0	21	[0.06418773]	No
+Stroke	0	28	[0.03755199]	Yes
+Stroke	0	7	[0.08199482]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.38924662]	No
+Sham	0	14	[0.01624892]	Yes
+Sham	0	21	[0.36588937]	No
+Sham	0	28	[0.21748502]	No
+Sham	0	7	[0.24589121]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.01004534]	Yes
+Stroke	Sham	14	[0.20911532]	No
+Stroke	Sham	21	[0.94674776]	No
+Stroke	Sham	28	[0.65545406]	No
+Stroke	Sham	7	[0.00236945]	Yes
+Stroke	Sham	0	[0.87748632]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_cut_3_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_cut_3
+          Mixed Linear Model Regression Results
+==========================================================
+Model:              MixedLM  Dependent Variable:  Value   
+No. Observations:   361      Method:              REML    
+No. Groups:         2        Scale:               0.0130  
+Min. group size:    156      Log-Likelihood:      260.7140
+Max. group size:    205      Converged:           Yes     
+Mean group size:    180.5                                 
+----------------------------------------------------------
+                 Coef. Std.Err.   z    P>|z| [0.025 0.975]
+----------------------------------------------------------
+Intercept        1.128    0.015 73.118 0.000  1.098  1.158
+merged_timepoint 0.002    0.001  3.384 0.001  0.001  0.003
+Group Var        0.000    0.005                           
+==========================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.11307083]	No
+Stroke	0	14	[0.53752537]	No
+Stroke	0	21	[0.04366973]	Yes
+Stroke	0	28	[0.01912109]	Yes
+Stroke	0	7	[0.04475904]	Yes
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.39817217]	No
+Sham	0	14	[0.02576582]	Yes
+Sham	0	21	[0.45166461]	No
+Sham	0	28	[0.27381165]	No
+Sham	0	7	[0.26634202]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.04052325]	Yes
+Stroke	Sham	14	[0.26243025]	No
+Stroke	Sham	21	[0.90357504]	No
+Stroke	Sham	28	[0.41288494]	No
+Stroke	Sham	7	[0.00159621]	Yes
+Stroke	Sham	0	[0.92690013]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_cut_4_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_cut_4
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0116
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 210756.776 0.000 1.000 -413075.690 413075.690
+merged_timepoint 0.002      0.001 3.395 0.001       0.001      0.003
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.24416494]	No
+Stroke	0	14	[0.53662641]	No
+Stroke	0	21	[0.01963888]	Yes
+Stroke	0	28	[0.00944522]	Yes
+Stroke	0	7	[0.05122583]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.47766914]	No
+Sham	0	14	[0.03208672]	Yes
+Sham	0	21	[0.45246739]	No
+Sham	0	28	[0.29062654]	No
+Sham	0	7	[0.23009167]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.1094621]	No
+Stroke	Sham	14	[0.26815861]	No
+Stroke	Sham	21	[0.83962638]	No
+Stroke	Sham	28	[0.26311843]	No
+Stroke	Sham	7	[0.00170419]	Yes
+Stroke	Sham	0	[0.95073457]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_dilated_0_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_dilated_0
+          Mixed Linear Model Regression Results
+==========================================================
+Model:              MixedLM  Dependent Variable:  Value   
+No. Observations:   361      Method:              REML    
+No. Groups:         2        Scale:               0.0130  
+Min. group size:    156      Log-Likelihood:      261.8892
+Max. group size:    205      Converged:           Yes     
+Mean group size:    180.5                                 
+----------------------------------------------------------
+                 Coef. Std.Err.   z    P>|z| [0.025 0.975]
+----------------------------------------------------------
+Intercept        1.133    0.012 98.404 0.000  1.110  1.155
+merged_timepoint 0.002    0.001  3.442 0.001  0.001  0.003
+Group Var        0.000    0.002                           
+==========================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.81512659]	No
+Stroke	0	14	[0.2406928]	No
+Stroke	0	21	[0.00371291]	Yes
+Stroke	0	28	[0.01510447]	Yes
+Stroke	0	7	[0.11734853]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.53701314]	No
+Sham	0	14	[0.05255406]	No
+Sham	0	21	[0.44907007]	No
+Sham	0	28	[0.242767]	No
+Sham	0	7	[0.39616385]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.28390179]	No
+Stroke	Sham	14	[0.39506082]	No
+Stroke	Sham	21	[0.61791987]	No
+Stroke	Sham	28	[0.61496421]	No
+Stroke	Sham	7	[0.00700354]	Yes
+Stroke	Sham	0	[0.7266615]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_dilated_1_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_dilated_1
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0107
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 202563.102 0.000 1.000 -397016.384 397016.384
+merged_timepoint 0.002      0.001 2.665 0.008       0.000      0.003
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.26936301]	No
+Stroke	0	14	[0.20313116]	No
+Stroke	0	21	[0.00326851]	Yes
+Stroke	0	28	[0.01853891]	Yes
+Stroke	0	7	[0.08787352]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.24738123]	No
+Sham	0	14	[0.04981072]	Yes
+Sham	0	21	[0.40875]	No
+Sham	0	28	[0.1629526]	No
+Sham	0	7	[0.25606975]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.63883228]	No
+Stroke	Sham	14	[0.63666676]	No
+Stroke	Sham	21	[0.63543849]	No
+Stroke	Sham	28	[0.63285493]	No
+Stroke	Sham	7	[0.0042443]	Yes
+Stroke	Sham	0	[0.94427977]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_dilated_2_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_dilated_2
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0093
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 188658.996 0.000 1.000 -369764.837 369764.837
+merged_timepoint 0.001      0.001 2.405 0.016       0.000      0.002
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.17837428]	No
+Stroke	0	14	[0.24773473]	No
+Stroke	0	21	[0.00694212]	Yes
+Stroke	0	28	[0.00990027]	Yes
+Stroke	0	7	[0.08504173]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.13019508]	No
+Sham	0	14	[0.03414436]	Yes
+Sham	0	21	[0.38783853]	No
+Sham	0	28	[0.14547984]	No
+Sham	0	7	[0.1171951]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.71079483]	No
+Stroke	Sham	14	[0.8224922]	No
+Stroke	Sham	21	[0.61369955]	No
+Stroke	Sham	28	[0.19579509]	No
+Stroke	Sham	7	[0.00655209]	Yes
+Stroke	Sham	0	[0.59451262]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_dilated_3_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_dilated_3
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0086
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 180799.052 0.000 1.000 -354359.631 354359.631
+merged_timepoint 0.001      0.001 2.435 0.015       0.000      0.002
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.2025383]	No
+Stroke	0	14	[0.28145769]	No
+Stroke	0	21	[0.0152551]	Yes
+Stroke	0	28	[0.01102779]	Yes
+Stroke	0	7	[0.09197164]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.12711153]	No
+Sham	0	14	[0.02885915]	Yes
+Sham	0	21	[0.32859066]	No
+Sham	0	28	[0.13844915]	No
+Sham	0	7	[0.07294562]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.76150079]	No
+Stroke	Sham	14	[0.94215236]	No
+Stroke	Sham	21	[0.67961691]	No
+Stroke	Sham	28	[0.110847]	No
+Stroke	Sham	7	[0.00890305]	Yes
+Stroke	Sham	0	[0.41128626]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_dilated_4_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_dilated_4
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0081
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 175550.129 0.000 1.000 -344071.930 344071.930
+merged_timepoint 0.001      0.000 2.276 0.023       0.000      0.002
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.19472536]	No
+Stroke	0	14	[0.30527944]	No
+Stroke	0	21	[0.02861415]	Yes
+Stroke	0	28	[0.02513929]	Yes
+Stroke	0	7	[0.11118646]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.09139692]	No
+Sham	0	14	[0.02003246]	Yes
+Sham	0	21	[0.24986579]	No
+Sham	0	28	[0.09844671]	No
+Sham	0	7	[0.03562476]	Yes
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.71253822]	No
+Stroke	Sham	14	[0.96636213]	No
+Stroke	Sham	21	[0.81385935]	No
+Stroke	Sham	28	[0.16070625]	No
+Stroke	Sham	7	[0.01010442]	Yes
+Stroke	Sham	0	[0.28743553]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_dilated_cut_0_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_dilated_cut_0
+          Mixed Linear Model Regression Results
+==========================================================
+Model:              MixedLM  Dependent Variable:  Value   
+No. Observations:   361      Method:              REML    
+No. Groups:         2        Scale:               0.0194  
+Min. group size:    156      Log-Likelihood:      189.1498
+Max. group size:    205      Converged:           Yes     
+Mean group size:    180.5                                 
+----------------------------------------------------------
+                 Coef. Std.Err.   z    P>|z| [0.025 0.975]
+----------------------------------------------------------
+Intercept        1.182    0.018 64.750 0.000  1.147  1.218
+merged_timepoint 0.004    0.001  4.906 0.000  0.002  0.005
+Group Var        0.000    0.005                           
+==========================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.00805208]	Yes
+Stroke	0	14	[0.33278422]	No
+Stroke	0	21	[0.00374827]	Yes
+Stroke	0	28	[0.00737232]	Yes
+Stroke	0	7	[0.05574628]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.96144613]	No
+Sham	0	14	[0.03278367]	Yes
+Sham	0	21	[0.39435557]	No
+Sham	0	28	[0.27273326]	No
+Sham	0	7	[0.54302454]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.04099001]	Yes
+Stroke	Sham	14	[0.21577427]	No
+Stroke	Sham	21	[0.59172602]	No
+Stroke	Sham	28	[0.366086]	No
+Stroke	Sham	7	[0.00703377]	Yes
+Stroke	Sham	0	[0.8027824]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_dilated_cut_1_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_dilated_cut_1
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0156
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 243896.525 0.000 1.000 -478028.405 478028.405
+merged_timepoint 0.003      0.001 4.054 0.000       0.001      0.004
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.62040667]	No
+Stroke	0	14	[0.28079582]	No
+Stroke	0	21	[0.00171055]	Yes
+Stroke	0	28	[0.0086519]	Yes
+Stroke	0	7	[0.0552708]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.6472714]	No
+Sham	0	14	[0.04427721]	Yes
+Sham	0	21	[0.4458904]	No
+Sham	0	28	[0.15915054]	No
+Sham	0	7	[0.50847765]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.31430403]	No
+Stroke	Sham	14	[0.35080466]	No
+Stroke	Sham	21	[0.4732268]	No
+Stroke	Sham	28	[0.58372046]	No
+Stroke	Sham	7	[0.00614384]	Yes
+Stroke	Sham	0	[0.81115249]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_dilated_cut_2_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_dilated_cut_2
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0125
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 218852.180 0.000 1.000 -428942.391 428942.391
+merged_timepoint 0.002      0.001 3.134 0.002       0.001      0.003
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.50895928]	No
+Stroke	0	14	[0.31840093]	No
+Stroke	0	21	[0.00338893]	Yes
+Stroke	0	28	[0.01051355]	Yes
+Stroke	0	7	[0.04085586]	Yes
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.4446609]	No
+Sham	0	14	[0.04193323]	Yes
+Sham	0	21	[0.46023476]	No
+Sham	0	28	[0.168057]	No
+Sham	0	7	[0.38628387]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.73097578]	No
+Stroke	Sham	14	[0.45192858]	No
+Stroke	Sham	21	[0.54191969]	No
+Stroke	Sham	28	[0.48503716]	No
+Stroke	Sham	7	[0.00527242]	Yes
+Stroke	Sham	0	[0.98800637]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_dilated_cut_3_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_dilated_cut_3
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0107
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 201778.792 0.000 1.000 -395479.165 395479.165
+merged_timepoint 0.001      0.001 2.547 0.011       0.000      0.003
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.25615179]	No
+Stroke	0	14	[0.3564246]	No
+Stroke	0	21	[0.00598229]	Yes
+Stroke	0	28	[0.02110906]	Yes
+Stroke	0	7	[0.03985653]	Yes
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.43864355]	No
+Sham	0	14	[0.06269257]	No
+Sham	0	21	[0.45976645]	No
+Sham	0	28	[0.23345329]	No
+Sham	0	7	[0.2995239]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.95790412]	No
+Stroke	Sham	14	[0.61628702]	No
+Stroke	Sham	21	[0.60080212]	No
+Stroke	Sham	28	[0.37427385]	No
+Stroke	Sham	7	[0.00485843]	Yes
+Stroke	Sham	0	[0.84398151]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOp-MOp_dilated_cut_4_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOp-MOp_dilated_cut_4
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0095
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 190655.997 0.000 1.000 -373678.888 373678.888
+merged_timepoint 0.001      0.001 2.171 0.030       0.000      0.002
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.18297997]	No
+Stroke	0	14	[0.41316346]	No
+Stroke	0	21	[0.01296552]	Yes
+Stroke	0	28	[0.0368561]	Yes
+Stroke	0	7	[0.05501681]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.34506399]	No
+Sham	0	14	[0.06040623]	No
+Sham	0	21	[0.4193758]	No
+Sham	0	28	[0.24252043]	No
+Sham	0	7	[0.16444612]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.87305439]	No
+Stroke	Sham	14	[0.69558331]	No
+Stroke	Sham	21	[0.66759955]	No
+Stroke	Sham	28	[0.28435608]	No
+Stroke	Sham	7	[0.00507773]	Yes
+Stroke	Sham	0	[0.64753185]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOs-MOs_0_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOs-MOs_0
+          Mixed Linear Model Regression Results
+==========================================================
+Model:              MixedLM  Dependent Variable:  Value   
+No. Observations:   361      Method:              REML    
+No. Groups:         2        Scale:               0.0272  
+Min. group size:    156      Log-Likelihood:      128.3486
+Max. group size:    205      Converged:           Yes     
+Mean group size:    180.5                                 
+----------------------------------------------------------
+                 Coef. Std.Err.   z    P>|z| [0.025 0.975]
+----------------------------------------------------------
+Intercept        1.084    0.030 36.625 0.000  1.026  1.142
+merged_timepoint 0.003    0.001  3.226 0.001  0.001  0.005
+Group Var        0.001    0.013                           
+==========================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.00432861]	Yes
+Stroke	0	14	[0.40147424]	No
+Stroke	0	21	[0.07094557]	No
+Stroke	0	28	[0.26893974]	No
+Stroke	0	7	[0.87021332]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.29756026]	No
+Sham	0	14	[0.07104815]	No
+Sham	0	21	[0.08204133]	No
+Sham	0	28	[0.18666508]	No
+Sham	0	7	[0.16584624]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00049223]	Yes
+Stroke	Sham	14	[0.65651701]	No
+Stroke	Sham	21	[0.27601683]	No
+Stroke	Sham	28	[0.44305664]	No
+Stroke	Sham	7	[0.06033843]	No
+Stroke	Sham	0	[0.67578668]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOs-MOs_1_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOs-MOs_1
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0174
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 257688.429 0.000 1.000 -505060.041 505060.041
+merged_timepoint 0.002      0.001 2.318 0.020       0.000      0.003
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.08971766]	No
+Stroke	0	14	[0.49167407]	No
+Stroke	0	21	[0.23353474]	No
+Stroke	0	28	[0.61481426]	No
+Stroke	0	7	[0.61770887]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.07603957]	No
+Sham	0	14	[0.09269656]	No
+Sham	0	21	[0.07115154]	No
+Sham	0	28	[0.15050753]	No
+Sham	0	7	[0.15367152]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00128221]	Yes
+Stroke	Sham	14	[0.75363289]	No
+Stroke	Sham	21	[0.19029083]	No
+Stroke	Sham	28	[0.25397517]	No
+Stroke	Sham	7	[0.06261855]	No
+Stroke	Sham	0	[0.89267327]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOs-MOs_2_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOs-MOs_2
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0145
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 235360.280 0.000 1.000 -461297.673 461297.673
+merged_timepoint 0.001      0.001 2.075 0.038       0.000      0.003
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.27873995]	No
+Stroke	0	14	[0.45407592]	No
+Stroke	0	21	[0.3207934]	No
+Stroke	0	28	[0.49014364]	No
+Stroke	0	7	[0.40139816]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.07920007]	No
+Sham	0	14	[0.10138146]	No
+Sham	0	21	[0.11196681]	No
+Sham	0	28	[0.22847495]	No
+Sham	0	7	[0.29808242]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00244342]	Yes
+Stroke	Sham	14	[0.64225776]	No
+Stroke	Sham	21	[0.17726149]	No
+Stroke	Sham	28	[0.32639953]	No
+Stroke	Sham	7	[0.03008994]	Yes
+Stroke	Sham	0	[0.72639033]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOs-MOs_3_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOs-MOs_3
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0119
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 212975.232 0.000 1.000 -417423.785 417423.785
+merged_timepoint 0.001      0.001 2.216 0.027       0.000      0.002
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.47141752]	No
+Stroke	0	14	[0.46203027]	No
+Stroke	0	21	[0.18395796]	No
+Stroke	0	28	[0.21076864]	No
+Stroke	0	7	[0.28161369]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.10009423]	No
+Sham	0	14	[0.07415866]	No
+Sham	0	21	[0.20100316]	No
+Sham	0	28	[0.26050856]	No
+Sham	0	7	[0.21413761]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00690785]	Yes
+Stroke	Sham	14	[0.47176737]	No
+Stroke	Sham	21	[0.35118055]	No
+Stroke	Sham	28	[0.61084008]	No
+Stroke	Sham	7	[0.0046389]	Yes
+Stroke	Sham	0	[0.65928703]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOs-MOs_4_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOs-MOs_4
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0104
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 199677.988 0.000 1.000 -391361.666 391361.666
+merged_timepoint 0.001      0.001 2.494 0.013       0.000      0.002
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.5100347]	No
+Stroke	0	14	[0.42624671]	No
+Stroke	0	21	[0.1086952]	No
+Stroke	0	28	[0.08294478]	No
+Stroke	0	7	[0.25256718]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.12523025]	No
+Sham	0	14	[0.05812199]	No
+Sham	0	21	[0.25335176]	No
+Sham	0	28	[0.22537279]	No
+Sham	0	7	[0.16728625]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.01435751]	Yes
+Stroke	Sham	14	[0.48315099]	No
+Stroke	Sham	21	[0.5394724]	No
+Stroke	Sham	28	[0.96495406]	No
+Stroke	Sham	7	[0.00344298]	Yes
+Stroke	Sham	0	[0.75102905]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOs-MOs_cut_0_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOs-MOs_cut_0
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0402
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 391787.523 0.000 1.000 -767889.435 767889.435
+merged_timepoint 0.004      0.001 3.427 0.001       0.002      0.006
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.00061673]	Yes
+Stroke	0	14	[0.47147008]	No
+Stroke	0	21	[0.13196384]	No
+Stroke	0	28	[0.3578502]	No
+Stroke	0	7	[0.86437332]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.34871917]	No
+Sham	0	14	[0.09408299]	No
+Sham	0	21	[0.13070031]	No
+Sham	0	28	[0.18181257]	No
+Sham	0	7	[0.62313673]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00032929]	Yes
+Stroke	Sham	14	[0.34635843]	No
+Stroke	Sham	21	[0.28321631]	No
+Stroke	Sham	28	[0.29641034]	No
+Stroke	Sham	7	[0.22004862]	No
+Stroke	Sham	0	[0.60602126]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOs-MOs_cut_1_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOs-MOs_cut_1
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0251
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 309797.470 0.000 1.000 -607191.884 607191.884
+merged_timepoint 0.002      0.001 2.746 0.006       0.001      0.004
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.02551714]	Yes
+Stroke	0	14	[0.46288511]	No
+Stroke	0	21	[0.19852425]	No
+Stroke	0	28	[0.42879372]	No
+Stroke	0	7	[0.67049264]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.17439468]	No
+Sham	0	14	[0.11072993]	No
+Sham	0	21	[0.15966631]	No
+Sham	0	28	[0.21569992]	No
+Sham	0	7	[0.41563773]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00045419]	Yes
+Stroke	Sham	14	[0.54298307]	No
+Stroke	Sham	21	[0.26442461]	No
+Stroke	Sham	28	[0.26413149]	No
+Stroke	Sham	7	[0.08576433]	No
+Stroke	Sham	0	[0.6552648]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOs-MOs_cut_2_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOs-MOs_cut_2
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0202
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 277890.242 0.000 1.000 -544654.866 544654.866
+merged_timepoint 0.002      0.001 2.364 0.018       0.000      0.003
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.1267514]	No
+Stroke	0	14	[0.43235668]	No
+Stroke	0	21	[0.33539724]	No
+Stroke	0	28	[0.32860097]	No
+Stroke	0	7	[0.3921628]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.16026169]	No
+Sham	0	14	[0.11271026]	No
+Sham	0	21	[0.1893125]	No
+Sham	0	28	[0.32063043]	No
+Sham	0	7	[0.51516025]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00127238]	Yes
+Stroke	Sham	14	[0.56742245]	No
+Stroke	Sham	21	[0.20981999]	No
+Stroke	Sham	28	[0.46960941]	No
+Stroke	Sham	7	[0.03310928]	Yes
+Stroke	Sham	0	[0.59477908]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOs-MOs_cut_3_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOs-MOs_cut_3
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0161
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 247730.322 0.000 1.000 -485542.510 485542.510
+merged_timepoint 0.002      0.001 2.325 0.020       0.000      0.003
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.25074014]	No
+Stroke	0	14	[0.46645719]	No
+Stroke	0	21	[0.24609719]	No
+Stroke	0	28	[0.17485974]	No
+Stroke	0	7	[0.2656655]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.2130086]	No
+Sham	0	14	[0.0975113]	No
+Sham	0	21	[0.30609308]	No
+Sham	0	28	[0.39214326]	No
+Sham	0	7	[0.35775385]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.0056592]	Yes
+Stroke	Sham	14	[0.44581797]	No
+Stroke	Sham	21	[0.39837925]	No
+Stroke	Sham	28	[0.78236573]	No
+Stroke	Sham	7	[0.00494418]	Yes
+Stroke	Sham	0	[0.56904576]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_MOs-MOs_cut_4_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_MOs-MOs_cut_4
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0137
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 228858.167 0.000 1.000 -448553.765 448553.765
+merged_timepoint 0.002      0.001 2.546 0.011       0.000      0.003
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.29305226]	No
+Stroke	0	14	[0.44376693]	No
+Stroke	0	21	[0.13384827]	No
+Stroke	0	28	[0.07067505]	No
+Stroke	0	7	[0.23749332]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.24801757]	No
+Sham	0	14	[0.08354891]	No
+Sham	0	21	[0.36530359]	No
+Sham	0	28	[0.38166004]	No
+Sham	0	7	[0.31038269]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.01195224]	Yes
+Stroke	Sham	14	[0.43791305]	No
+Stroke	Sham	21	[0.59526014]	No
+Stroke	Sham	28	[0.87651062]	No
+Stroke	Sham	7	[0.00381174]	Yes
+Stroke	Sham	0	[0.60913213]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ll-SSp_ll_0_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ll-SSp_ll_0
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0171
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 255921.940 -0.000 1.000 -501597.785 501597.785
+merged_timepoint -0.000      0.001 -0.684 0.494      -0.002      0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[3.06883155e-06]	Yes
+Stroke	0	14	[0.00125281]	Yes
+Stroke	0	21	[0.00140785]	Yes
+Stroke	0	28	[0.00651535]	Yes
+Stroke	0	7	[0.97758054]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.00995]	Yes
+Sham	0	14	[0.45853976]	No
+Sham	0	21	[0.33350505]	No
+Sham	0	28	[0.26704806]	No
+Sham	0	7	[0.03586119]	Yes
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.0237505]	Yes
+Stroke	Sham	14	[0.00205223]	Yes
+Stroke	Sham	21	[0.2339755]	No
+Stroke	Sham	28	[0.07943235]	No
+Stroke	Sham	7	[0.13541574]	No
+Stroke	Sham	0	[0.58266719]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ll-SSp_ll_1_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ll-SSp_ll_1
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0117
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 211291.859 -0.000 1.000 -414124.433 414124.433
+merged_timepoint -0.000      0.001 -0.456 0.648      -0.001      0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[3.2595955e-05]	Yes
+Stroke	0	14	[0.01538408]	Yes
+Stroke	0	21	[0.00586701]	Yes
+Stroke	0	28	[0.00839028]	Yes
+Stroke	0	7	[0.68472624]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.00960647]	Yes
+Sham	0	14	[0.51095415]	No
+Sham	0	21	[0.43348907]	No
+Sham	0	28	[0.48231345]	No
+Sham	0	7	[0.05918174]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.11306715]	No
+Stroke	Sham	14	[0.01369339]	Yes
+Stroke	Sham	21	[0.34728957]	No
+Stroke	Sham	28	[0.02874769]	Yes
+Stroke	Sham	7	[0.14336397]	No
+Stroke	Sham	0	[0.50440115]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ll-SSp_ll_2_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ll-SSp_ll_2
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0100
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 195903.885 -0.000 1.000 -383964.559 383964.559
+merged_timepoint -0.000      0.001 -0.117 0.907      -0.001      0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.00023468]	Yes
+Stroke	0	14	[0.06030856]	No
+Stroke	0	21	[0.01382144]	Yes
+Stroke	0	28	[0.01547669]	Yes
+Stroke	0	7	[0.53615731]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.00784874]	Yes
+Sham	0	14	[0.21196711]	No
+Sham	0	21	[0.33469351]	No
+Sham	0	28	[0.30613419]	No
+Sham	0	7	[0.01390872]	Yes
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.24743057]	No
+Stroke	Sham	14	[0.05864935]	No
+Stroke	Sham	21	[0.44502964]	No
+Stroke	Sham	28	[0.03410789]	Yes
+Stroke	Sham	7	[0.10154616]	No
+Stroke	Sham	0	[0.20317514]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ll-SSp_ll_3_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ll-SSp_ll_3
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0090
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 185210.433 0.000 1.000 -363005.779 363005.779
+merged_timepoint 0.000      0.001 0.418 0.676      -0.001      0.001
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.00067327]	Yes
+Stroke	0	14	[0.09917039]	No
+Stroke	0	21	[0.02116905]	Yes
+Stroke	0	28	[0.01060361]	Yes
+Stroke	0	7	[0.39579164]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.01468462]	Yes
+Sham	0	14	[0.0707749]	No
+Sham	0	21	[0.28958687]	No
+Sham	0	28	[0.1921487]	No
+Sham	0	7	[0.00819361]	Yes
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.28195302]	No
+Stroke	Sham	14	[0.14882276]	No
+Stroke	Sham	21	[0.49681033]	No
+Stroke	Sham	28	[0.02466093]	Yes
+Stroke	Sham	7	[0.06662369]	No
+Stroke	Sham	0	[0.12552884]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ll-SSp_ll_4_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ll-SSp_ll_4
+               Mixed Linear Model Regression Results
+====================================================================
+Model:                  MixedLM      Dependent Variable:      Value 
+No. Observations:       361          Method:                  REML  
+No. Groups:             2            Scale:                   0.0082
+Min. group size:        156          Log-Likelihood:          inf   
+Max. group size:        205          Converged:               Yes   
+Mean group size:        180.5                                       
+--------------------------------------------------------------------
+                 Coef.  Std.Err.    z   P>|z|    [0.025     0.975]  
+--------------------------------------------------------------------
+Intercept        0.000 176982.917 0.000 1.000 -346880.142 346880.142
+merged_timepoint 0.000      0.000 0.640 0.522      -0.001      0.001
+Group Var        0.000                                              
+====================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[0.00071741]	Yes
+Stroke	0	14	[0.15102771]	No
+Stroke	0	21	[0.0223291]	Yes
+Stroke	0	28	[0.01341778]	Yes
+Stroke	0	7	[0.28061009]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.02529862]	Yes
+Sham	0	14	[0.04426719]	Yes
+Sham	0	21	[0.29803558]	No
+Sham	0	28	[0.18510347]	No
+Sham	0	7	[0.01111936]	Yes
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.27673112]	No
+Stroke	Sham	14	[0.28065082]	No
+Stroke	Sham	21	[0.47326575]	No
+Stroke	Sham	28	[0.02512184]	Yes
+Stroke	Sham	7	[0.04212824]	Yes
+Stroke	Sham	0	[0.14652318]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ll-SSp_ll_cut_0_log_significant.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ll-SSp_ll_cut_0
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0347
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 364009.107 -0.000 1.000 -713444.741 713444.741
+merged_timepoint -0.003      0.001 -2.615 0.009      -0.005     -0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[2.10153165e-06]	Yes
+Stroke	0	14	[0.01255759]	Yes
+Stroke	0	21	[0.00903171]	Yes
+Stroke	0	28	[0.95871635]	No
+Stroke	0	7	[0.85281477]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.0221748]	Yes
+Sham	0	14	[0.36130317]	No
+Sham	0	21	[0.23046853]	No
+Sham	0	28	[0.51569134]	No
+Sham	0	7	[0.10904437]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00366464]	Yes
+Stroke	Sham	14	[0.0328695]	Yes
+Stroke	Sham	21	[0.55757716]	No
+Stroke	Sham	28	[0.70162502]	No
+Stroke	Sham	7	[0.15492624]	No
+Stroke	Sham	0	[0.73580309]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ll-SSp_ll_cut_1_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ll-SSp_ll_cut_1
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0268
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 319962.344 -0.000 1.000 -627114.670 627114.670
+merged_timepoint -0.001      0.001 -1.620 0.105      -0.003      0.000
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[2.11607682e-05]	Yes
+Stroke	0	14	[0.01875985]	Yes
+Stroke	0	21	[0.00134176]	Yes
+Stroke	0	28	[0.47955664]	No
+Stroke	0	7	[0.58527491]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.02446905]	Yes
+Sham	0	14	[0.34903411]	No
+Sham	0	21	[0.26070273]	No
+Sham	0	28	[0.46905298]	No
+Sham	0	7	[0.07823464]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.01128865]	Yes
+Stroke	Sham	14	[0.02231423]	Yes
+Stroke	Sham	21	[0.32481074]	No
+Stroke	Sham	28	[0.5640066]	No
+Stroke	Sham	7	[0.15849138]	No
+Stroke	Sham	0	[0.38004969]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ll-SSp_ll_cut_2_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ll-SSp_ll_cut_2
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0228
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 295394.202 -0.000 1.000 -578961.996 578961.996
+merged_timepoint -0.001      0.001 -1.304 0.192      -0.003      0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[6.96086159e-05]	Yes
+Stroke	0	14	[0.03790114]	Yes
+Stroke	0	21	[0.00226153]	Yes
+Stroke	0	28	[0.58856977]	No
+Stroke	0	7	[0.24387909]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.03832749]	Yes
+Sham	0	14	[0.38140345]	No
+Sham	0	21	[0.25109502]	No
+Sham	0	28	[0.43062989]	No
+Sham	0	7	[0.09678363]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.01856254]	Yes
+Stroke	Sham	14	[0.01861763]	Yes
+Stroke	Sham	21	[0.32283132]	No
+Stroke	Sham	28	[0.47903327]	No
+Stroke	Sham	7	[0.10228154]	No
+Stroke	Sham	0	[0.23139318]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ll-SSp_ll_cut_3_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ll-SSp_ll_cut_3
+           Mixed Linear Model Regression Results
+===========================================================
+Model:               MixedLM  Dependent Variable:  Value   
+No. Observations:    361      Method:              REML    
+No. Groups:          2        Scale:               0.0193  
+Min. group size:     156      Log-Likelihood:      189.4758
+Max. group size:     205      Converged:           Yes     
+Mean group size:     180.5                                 
+-----------------------------------------------------------
+                 Coef.  Std.Err.   z    P>|z| [0.025 0.975]
+-----------------------------------------------------------
+Intercept         1.069    0.026 41.341 0.000  1.018  1.119
+merged_timepoint -0.001    0.001 -1.376 0.169 -0.003  0.000
+Group Var         0.001    0.012                           
+===========================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[3.87206228e-05]	Yes
+Stroke	0	14	[0.03077433]	Yes
+Stroke	0	21	[0.00403008]	Yes
+Stroke	0	28	[0.96489664]	No
+Stroke	0	7	[0.05647205]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.09396547]	No
+Sham	0	14	[0.44281686]	No
+Sham	0	21	[0.2838683]	No
+Sham	0	28	[0.42476369]	No
+Sham	0	7	[0.0905257]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.01156886]	Yes
+Stroke	Sham	14	[0.01518196]	Yes
+Stroke	Sham	21	[0.40380281]	No
+Stroke	Sham	28	[0.82635188]	No
+Stroke	Sham	7	[0.01743547]	Yes
+Stroke	Sham	0	[0.25026612]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ll-SSp_ll_cut_4_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ll-SSp_ll_cut_4
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0167
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 252297.749 -0.000 1.000 -494494.502 494494.502
+merged_timepoint -0.001      0.001 -1.522 0.128      -0.002      0.000
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[8.42829147e-06]	Yes
+Stroke	0	14	[0.03880696]	Yes
+Stroke	0	21	[0.00365243]	Yes
+Stroke	0	28	[0.90070298]	No
+Stroke	0	7	[0.01944242]	Yes
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.14276317]	No
+Sham	0	14	[0.4520881]	No
+Sham	0	21	[0.40688936]	No
+Sham	0	28	[0.33322938]	No
+Sham	0	7	[0.14607338]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00583075]	Yes
+Stroke	Sham	14	[0.03268816]	Yes
+Stroke	Sham	21	[0.40417247]	No
+Stroke	Sham	28	[0.75983763]	No
+Stroke	Sham	7	[0.00622917]	Yes
+Stroke	Sham	0	[0.39324766]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ul-SSp_ul_0_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ul-SSp_ul_0
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0258
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 313691.039 -0.000 1.000 -614823.139 614823.139
+merged_timepoint -0.001      0.001 -0.915 0.360      -0.003      0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[1.98078037e-06]	Yes
+Stroke	0	14	[0.00017654]	Yes
+Stroke	0	21	[0.00091459]	Yes
+Stroke	0	28	[0.00971356]	Yes
+Stroke	0	7	[0.42895794]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.01454361]	Yes
+Sham	0	14	[0.80986708]	No
+Sham	0	21	[0.40664591]	No
+Sham	0	28	[0.30869704]	No
+Sham	0	7	[0.01282664]	Yes
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00776438]	Yes
+Stroke	Sham	14	[5.58473952e-05]	Yes
+Stroke	Sham	21	[0.1588607]	No
+Stroke	Sham	28	[0.07280915]	No
+Stroke	Sham	7	[0.19929516]	No
+Stroke	Sham	0	[0.72249092]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ul-SSp_ul_1_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ul-SSp_ul_1
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0187
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 267297.498 -0.000 1.000 -523893.470 523893.470
+merged_timepoint -0.000      0.001 -0.425 0.671      -0.002      0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[4.36626601e-06]	Yes
+Stroke	0	14	[0.00366381]	Yes
+Stroke	0	21	[0.0016115]	Yes
+Stroke	0	28	[0.00411158]	Yes
+Stroke	0	7	[0.65977576]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.03921927]	Yes
+Sham	0	14	[0.65248324]	No
+Sham	0	21	[0.48231253]	No
+Sham	0	28	[0.2643161]	No
+Sham	0	7	[0.01543277]	Yes
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00880052]	Yes
+Stroke	Sham	14	[0.00178108]	Yes
+Stroke	Sham	21	[0.17729219]	No
+Stroke	Sham	28	[0.03583236]	Yes
+Stroke	Sham	7	[0.19886106]	No
+Stroke	Sham	0	[0.50778461]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ul-SSp_ul_2_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ul-SSp_ul_2
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0159
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 246508.798 -0.000 1.000 -483148.365 483148.365
+merged_timepoint -0.000      0.001 -0.437 0.662      -0.002      0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[3.16181479e-05]	Yes
+Stroke	0	14	[0.04529565]	Yes
+Stroke	0	21	[0.01816613]	Yes
+Stroke	0	28	[0.02134564]	Yes
+Stroke	0	7	[0.52879172]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.05179502]	No
+Sham	0	14	[0.35149719]	No
+Sham	0	21	[0.35020895]	No
+Sham	0	28	[0.23176094]	No
+Sham	0	7	[0.0160732]	Yes
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.01295062]	Yes
+Stroke	Sham	14	[0.01277178]	Yes
+Stroke	Sham	21	[0.31644475]	No
+Stroke	Sham	28	[0.02550016]	Yes
+Stroke	Sham	7	[0.15425457]	No
+Stroke	Sham	0	[0.10365333]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ul-SSp_ul_3_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ul-SSp_ul_3
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0139
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 230338.290 -0.000 1.000 -451454.752 451454.752
+merged_timepoint -0.000      0.001 -0.494 0.621      -0.002      0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[1.75665917e-05]	Yes
+Stroke	0	14	[0.09341517]	No
+Stroke	0	21	[0.02138857]	Yes
+Stroke	0	28	[0.03762844]	Yes
+Stroke	0	7	[0.23663197]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.1347808]	No
+Sham	0	14	[0.35636676]	No
+Sham	0	21	[0.43124385]	No
+Sham	0	28	[0.38276489]	No
+Sham	0	7	[0.06195972]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00817739]	Yes
+Stroke	Sham	14	[0.04904942]	Yes
+Stroke	Sham	21	[0.3768395]	No
+Stroke	Sham	28	[0.02663012]	Yes
+Stroke	Sham	7	[0.10222179]	No
+Stroke	Sham	0	[0.16893957]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ul-SSp_ul_4_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ul-SSp_ul_4
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0124
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 217472.629 -0.000 1.000 -426238.521 426238.521
+merged_timepoint -0.000      0.001 -0.636 0.525      -0.002      0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[8.02146623e-06]	Yes
+Stroke	0	14	[0.15686611]	No
+Stroke	0	21	[0.02508533]	Yes
+Stroke	0	28	[0.07108467]	No
+Stroke	0	7	[0.12420684]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.16708516]	No
+Sham	0	14	[0.42364247]	No
+Sham	0	21	[0.4876272]	No
+Sham	0	28	[0.47059445]	No
+Sham	0	7	[0.07436787]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00605076]	Yes
+Stroke	Sham	14	[0.07835748]	No
+Stroke	Sham	21	[0.38419239]	No
+Stroke	Sham	28	[0.0287584]	Yes
+Stroke	Sham	7	[0.05016159]	No
+Stroke	Sham	0	[0.20014931]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ul-SSp_ul_cut_0_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ul-SSp_ul_cut_0
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0313
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 345813.278 -0.000 1.000 -677781.570 677781.570
+merged_timepoint -0.002      0.001 -1.649 0.099      -0.003      0.000
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[2.45846451e-06]	Yes
+Stroke	0	14	[0.0036119]	Yes
+Stroke	0	21	[0.00194123]	Yes
+Stroke	0	28	[0.0415437]	Yes
+Stroke	0	7	[0.61828108]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.0330553]	Yes
+Sham	0	14	[0.95030204]	No
+Sham	0	21	[0.42334439]	No
+Sham	0	28	[0.48836017]	No
+Sham	0	7	[0.09926187]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00256982]	Yes
+Stroke	Sham	14	[0.00118168]	Yes
+Stroke	Sham	21	[0.25447179]	No
+Stroke	Sham	28	[0.15781038]	No
+Stroke	Sham	7	[0.44096743]	No
+Stroke	Sham	0	[0.74656305]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ul-SSp_ul_cut_1_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ul-SSp_ul_cut_1
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0229
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 295642.495 -0.000 1.000 -579448.643 579448.643
+merged_timepoint -0.001      0.001 -1.009 0.313      -0.002      0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[1.84325931e-05]	Yes
+Stroke	0	14	[0.00531263]	Yes
+Stroke	0	21	[0.00047012]	Yes
+Stroke	0	28	[0.02645626]	Yes
+Stroke	0	7	[0.77309004]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.06753925]	No
+Sham	0	14	[0.77583507]	No
+Sham	0	21	[0.46717681]	No
+Sham	0	28	[0.43615099]	No
+Sham	0	7	[0.12158553]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00856819]	Yes
+Stroke	Sham	14	[0.00471679]	Yes
+Stroke	Sham	21	[0.23290861]	No
+Stroke	Sham	28	[0.15328759]	No
+Stroke	Sham	7	[0.34285709]	No
+Stroke	Sham	0	[0.79054842]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ul-SSp_ul_cut_2_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ul-SSp_ul_cut_2
+           Mixed Linear Model Regression Results
+===========================================================
+Model:               MixedLM  Dependent Variable:  Value   
+No. Observations:    361      Method:              REML    
+No. Groups:          2        Scale:               0.0192  
+Min. group size:     156      Log-Likelihood:      190.4593
+Max. group size:     205      Converged:           Yes     
+Mean group size:     180.5                                 
+-----------------------------------------------------------
+                 Coef.  Std.Err.   z    P>|z| [0.025 0.975]
+-----------------------------------------------------------
+Intercept         1.093    0.029 37.516 0.000  1.036  1.150
+merged_timepoint -0.001    0.001 -0.949 0.343 -0.002  0.001
+Group Var         0.001    0.016                           
+===========================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[4.24272223e-05]	Yes
+Stroke	0	14	[0.01863854]	Yes
+Stroke	0	21	[0.00358703]	Yes
+Stroke	0	28	[0.11271451]	No
+Stroke	0	7	[0.55918759]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.08125383]	No
+Sham	0	14	[0.45202849]	No
+Sham	0	21	[0.33048615]	No
+Sham	0	28	[0.32768698]	No
+Sham	0	7	[0.13971404]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.01255938]	Yes
+Stroke	Sham	14	[0.01221231]	Yes
+Stroke	Sham	21	[0.39883087]	No
+Stroke	Sham	28	[0.21346688]	No
+Stroke	Sham	7	[0.27612935]	No
+Stroke	Sham	0	[0.31318674]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ul-SSp_ul_cut_3_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ul-SSp_ul_cut_3
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0166
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 251697.988 -0.000 1.000 -493318.992 493318.992
+merged_timepoint -0.001      0.001 -1.187 0.235      -0.002      0.001
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[1.74447544e-05]	Yes
+Stroke	0	14	[0.04473278]	Yes
+Stroke	0	21	[0.00815821]	Yes
+Stroke	0	28	[0.31249463]	No
+Stroke	0	7	[0.14029321]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.18384309]	No
+Sham	0	14	[0.50090312]	No
+Sham	0	21	[0.39904675]	No
+Sham	0	28	[0.50129307]	No
+Sham	0	7	[0.28330436]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00675064]	Yes
+Stroke	Sham	14	[0.03325721]	Yes
+Stroke	Sham	21	[0.50053787]	No
+Stroke	Sham	28	[0.30664175]	No
+Stroke	Sham	7	[0.11217401]	No
+Stroke	Sham	0	[0.3588263]	No

output/Final_Quantitative_output/mixed_model_analysis_dunnett/ad_CC_SSp_ul-SSp_ul_cut_4_log.txt

@@ -0,0 +1,39 @@
+Model Name: ad_CC_SSp_ul-SSp_ul_cut_4
+                Mixed Linear Model Regression Results
+======================================================================
+Model:                  MixedLM       Dependent Variable:       Value 
+No. Observations:       361           Method:                   REML  
+No. Groups:             2             Scale:                    0.0150
+Min. group size:        156           Log-Likelihood:           inf   
+Max. group size:        205           Converged:                Yes   
+Mean group size:        180.5                                         
+----------------------------------------------------------------------
+                 Coef.   Std.Err.    z    P>|z|    [0.025     0.975]  
+----------------------------------------------------------------------
+Intercept        -0.000 239267.895 -0.000 1.000 -468956.457 468956.457
+merged_timepoint -0.001      0.001 -1.411 0.158      -0.002      0.000
+Group Var         0.000                                               
+======================================================================
+
+Dunnett Multiple Comparisons for time effect:
+Group	TP1	TP2	PValue	Significant
+Stroke	0	3	[6.30105513e-06]	Yes
+Stroke	0	14	[0.10382438]	No
+Stroke	0	21	[0.01437082]	Yes
+Stroke	0	28	[0.59185426]	No
+Stroke	0	7	[0.06857065]	No
+Stroke	0	0	[1.]	No
+Sham	0	3	[0.19324316]	No
+Sham	0	14	[0.61874844]	No
+Sham	0	21	[0.45677663]	No
+Sham	0	28	[0.52066528]	No
+Sham	0	7	[0.34817849]	No
+Sham	0	0	[1.]	No
+Sidak Multiple Comparisons for group effect:
+Group1	Group2	TimePoint	PValue	Significant
+Stroke	Sham	3	[0.00435833]	Yes
+Stroke	Sham	14	[0.05763756]	No
+Stroke	Sham	21	[0.53873446]	No
+Stroke	Sham	28	[0.45807129]	No
+Stroke	Sham	7	[0.07722823]	No
+Stroke	Sham	0	[0.34247466]	No