arefks 2 місяців тому
батько
коміт
3a7f02f1c4
58 змінених файлів з 0 додано та 0 видалено
  1. 0 0
      input/Viral_tracing_density_maps_from_Jupyter_Notebook/10_wks_coronal_100141454_50um_projection_density.nrrd
  2. 0 0
      input/Viral_tracing_density_maps_from_Jupyter_Notebook/11_wks_coronal_112791318_50um_projection_density.nrrd
  3. 0 0
      input/Viral_tracing_density_maps_from_Jupyter_Notebook/11_wks_coronal_113884251_50um_projection_density.nrrd
  4. 0 0
      input/Viral_tracing_density_maps_from_Jupyter_Notebook/11_wks_coronal_147212977_50um_projection_density.nrrd
  5. 0 0
      input/Viral_tracing_density_maps_from_Jupyter_Notebook/Mop_projection_density_VT.nii.gz
  6. 0 0
      input/Viral_tracing_density_maps_from_Jupyter_Notebook/Mos_projection_density_VT.nii.gz
  7. 0 0
      input/Viral_tracing_density_maps_from_Jupyter_Notebook/Optic_tract_projection_density_VT.nii.gz
  8. 0 0
      input/Viral_tracing_density_maps_from_Jupyter_Notebook/SSp_ul_and_ll_projection_density_VT.nii.gz
  9. 0 0
      input/Viral_tracing_density_maps_from_Jupyter_Notebook/Thalamocortical_projection_density_VT.nii.gz
  10. 0 0
      input/Viral_tracing_density_maps_from_Jupyter_Notebook/average_template_50_from_website.nii.gz
  11. BIN
      output/ImagJ/ViralTracing/Mop_projection_density_VT_flipped.nii.gz
  12. BIN
      output/ImagJ/ViralTracing/Mos_projection_density_VT_flipped.nii.gz
  13. BIN
      output/ImagJ/ViralTracing/Optic_tract_projection_density_VT_flipped.nii.gz
  14. BIN
      output/ImagJ/ViralTracing/SSp_ul_and_ll_projection_density_VT_flipped.nii.gz
  15. BIN
      output/ImagJ/ViralTracing/Thalamocortical_projection_density_VT_flipped.nii.gz
  16. BIN
      output/ImagJ/average_template_50_from_website_flipped.nii.gz
  17. 0 0
      output/Tract_Density_Map/CC_MOp(dilated).gz.nii
  18. 0 0
      output/Tract_Density_Map/CC_MOp(dilated)_cut.nii.gz.nii
  19. 0 0
      output/Tract_Density_Map/CC_MOp_MOp.gz.nii
  20. 0 0
      output/Tract_Density_Map/CC_MOp_MOp_cut.nii.gz.nii
  21. 0 0
      output/Tract_Density_Map/CC_MOs_MOs.gz.nii
  22. 0 0
      output/Tract_Density_Map/CC_MOs_MOs_cut.nii.gz.nii
  23. 0 0
      output/Tract_Density_Map/CC_SSp_ll.gz.nii
  24. 0 0
      output/Tract_Density_Map/CC_SSp_ll_cut.nii.gz.nii
  25. 0 0
      output/Tract_Density_Map/CC_SSp_ul.gz.nii
  26. 0 0
      output/Tract_Density_Map/CC_SSp_ul_cut.nii.gz.nii
  27. 0 0
      output/Tract_Density_Map/CST_links.gz.nii
  28. 0 0
      output/Tract_Density_Map/CST_rechts.gz.nii
  29. 0 0
      output/Tract_Density_Map/Optic_tract_final.nii.gz.nii
  30. 0 0
      output/Tract_Density_Map/Thalamocorticale_links.gz.nii
  31. 0 0
      output/Tract_Density_Map/Thalamocorticale_rechts.gz.nii
  32. 0 0
      output/Tract_Mask/CC_MOp(dilated).nii
  33. 0 0
      output/Tract_Mask/CC_MOp(dilated)_cut.tt.nii
  34. 0 0
      output/Tract_Mask/CC_MOp_MOp.tt.nii
  35. 0 0
      output/Tract_Mask/CC_MOp_MOp_cut.tt.nii
  36. 0 0
      output/Tract_Mask/CC_MOs_MOs.tt.nii
  37. 0 0
      output/Tract_Mask/CC_MOs_MOs_cut.tt.nii
  38. 0 0
      output/Tract_Mask/CC_SSp_ll.tt.nii
  39. 0 0
      output/Tract_Mask/CC_SSp_ll_cut.tt.nii
  40. 0 0
      output/Tract_Mask/CC_SSp_ul.tt.nii
  41. 0 0
      output/Tract_Mask/CC_SSp_ul_cut.tt.nii
  42. 0 0
      output/Tract_Mask/CST_links_CC_cut.nii
  43. 0 0
      output/Tract_Mask/CST_links_CCasROA.nii
  44. 0 0
      output/Tract_Mask/CST_links_ROA_CC_fibers_cut.nii
  45. 0 0
      output/Tract_Mask/CST_rechts_CC_cut.nii
  46. 0 0
      output/Tract_Mask/CST_rechts_CCasROA.nii
  47. 0 0
      output/Tract_Mask/CST_rechts_ROA_CC_fibers_cut.nii
  48. 0 0
      output/Tract_Mask/Optic_tract_final.tt.nii
  49. 0 0
      output/Tract_Mask/Retikulospinal_tract_links.nii
  50. 0 0
      output/Tract_Mask/Retikulospinal_tract_rechts.nii
  51. 0 0
      output/Tract_Mask/Rubrospinal_tract_links_flipped.nii
  52. 0 0
      output/Tract_Mask/Rubrospinal_tract_rechts.nii
  53. 0 0
      output/Tract_Mask/Thalamocorticale_links_SSp_and_SSs_End.nii
  54. 0 0
      output/Tract_Mask/Thalamocorticale_links_SSp_ll_and_ul_ROI.tt.nii
  55. 0 0
      output/Tract_Mask/Thalamocorticale_links_SSp_ul_and_ll_End_0,2.tt.nii
  56. 0 0
      output/Tract_Mask/Thalamocorticale_rechts_SSp_and_SSs_End.nii
  57. 0 0
      output/Tract_Mask/Thalamocorticale_rechts_SSp_ll_and_ul_ROI.tt.nii
  58. 0 0
      output/Tract_Mask/Thalamocorticale_rechts_SSp_ul_and_ll_End_0,2.tt.nii

input/Viral_tracing_density_maps_from_Jupyter_Notebook/Mos_projection_density/10_wks_coronal_100141454_50um_projection_density.nrrd → input/Viral_tracing_density_maps_from_Jupyter_Notebook/10_wks_coronal_100141454_50um_projection_density.nrrd


input/Viral_tracing_density_maps_from_Jupyter_Notebook/SSp_ul_and_ll_projection_density/11_wks_coronal_112791318_50um_projection_density.nrrd → input/Viral_tracing_density_maps_from_Jupyter_Notebook/11_wks_coronal_112791318_50um_projection_density.nrrd


input/Viral_tracing_density_maps_from_Jupyter_Notebook/Thalamocortical_projection_density/11_wks_coronal_113884251_50um_projection_density.nrrd → input/Viral_tracing_density_maps_from_Jupyter_Notebook/11_wks_coronal_113884251_50um_projection_density.nrrd


input/Viral_tracing_density_maps_from_Jupyter_Notebook/Optic_tract_projection_density/11_wks_coronal_147212977_50um_projection_density.nrrd → input/Viral_tracing_density_maps_from_Jupyter_Notebook/11_wks_coronal_147212977_50um_projection_density.nrrd


input/Viral_tracing_density_maps_from_Jupyter_Notebook/Mop_projection_density/Mop_projection_density_VT.nii.gz → input/Viral_tracing_density_maps_from_Jupyter_Notebook/Mop_projection_density_VT.nii.gz


input/Viral_tracing_density_maps_from_Jupyter_Notebook/Mos_projection_density/Mos_projection_density_VT.nii.gz → input/Viral_tracing_density_maps_from_Jupyter_Notebook/Mos_projection_density_VT.nii.gz


input/Viral_tracing_density_maps_from_Jupyter_Notebook/Optic_tract_projection_density/Optic_tract_projection_density_VT.nii.gz → input/Viral_tracing_density_maps_from_Jupyter_Notebook/Optic_tract_projection_density_VT.nii.gz


input/Viral_tracing_density_maps_from_Jupyter_Notebook/SSp_ul_and_ll_projection_density/SSp_ul_and_ll_projection_density_VT.nii.gz → input/Viral_tracing_density_maps_from_Jupyter_Notebook/SSp_ul_and_ll_projection_density_VT.nii.gz


input/Viral_tracing_density_maps_from_Jupyter_Notebook/Thalamocortical_projection_density/Thalamocortical_projection_density_VT.nii.gz → input/Viral_tracing_density_maps_from_Jupyter_Notebook/Thalamocortical_projection_density_VT.nii.gz


input/Viral_tracing_density_maps_from_Jupyter_Notebook/Template/average_template_50_from_website.nii.gz → input/Viral_tracing_density_maps_from_Jupyter_Notebook/average_template_50_from_website.nii.gz


BIN
output/ImagJ/ViralTracing/Mop_projection_density_VT_flipped.nii.gz


BIN
output/ImagJ/ViralTracing/Mos_projection_density_VT_flipped.nii.gz


BIN
output/ImagJ/ViralTracing/Optic_tract_projection_density_VT_flipped.nii.gz


BIN
output/ImagJ/ViralTracing/SSp_ul_and_ll_projection_density_VT_flipped.nii.gz


BIN
output/ImagJ/ViralTracing/Thalamocortical_projection_density_VT_flipped.nii.gz


BIN
output/ImagJ/average_template_50_from_website_flipped.nii.gz


output/Tract_Density_Map/CC_masks_not_cut/CC_MOp(dilated).gz.nii → output/Tract_Density_Map/CC_MOp(dilated).gz.nii


output/Tract_Density_Map/CC_masks_cut/CC_MOp(dilated)_cut.nii.gz.nii → output/Tract_Density_Map/CC_MOp(dilated)_cut.nii.gz.nii


output/Tract_Density_Map/CC_masks_not_cut/CC_MOp_MOp.gz.nii → output/Tract_Density_Map/CC_MOp_MOp.gz.nii


output/Tract_Density_Map/CC_masks_cut/CC_MOp_MOp_cut.nii.gz.nii → output/Tract_Density_Map/CC_MOp_MOp_cut.nii.gz.nii


output/Tract_Density_Map/CC_masks_not_cut/CC_MOs_MOs.gz.nii → output/Tract_Density_Map/CC_MOs_MOs.gz.nii


output/Tract_Density_Map/CC_masks_cut/CC_MOs_MOs_cut.nii.gz.nii → output/Tract_Density_Map/CC_MOs_MOs_cut.nii.gz.nii


output/Tract_Density_Map/CC_masks_not_cut/CC_SSp_ll.gz.nii → output/Tract_Density_Map/CC_SSp_ll.gz.nii


output/Tract_Density_Map/CC_masks_cut/CC_SSp_ll_cut.nii.gz.nii → output/Tract_Density_Map/CC_SSp_ll_cut.nii.gz.nii


output/Tract_Density_Map/CC_masks_not_cut/CC_SSp_ul.gz.nii → output/Tract_Density_Map/CC_SSp_ul.gz.nii


output/Tract_Density_Map/CC_masks_cut/CC_SSp_ul_cut.nii.gz.nii → output/Tract_Density_Map/CC_SSp_ul_cut.nii.gz.nii


output/Tract_Density_Map/CST_masks/CST_links.gz.nii → output/Tract_Density_Map/CST_links.gz.nii


output/Tract_Density_Map/CST_masks/CST_rechts.gz.nii → output/Tract_Density_Map/CST_rechts.gz.nii


output/Tract_Density_Map/Optic_tract_mask/Optic_tract_final.nii.gz.nii → output/Tract_Density_Map/Optic_tract_final.nii.gz.nii


output/Tract_Density_Map/Thalamocortical_tract_masks/Thalamocorticale_links.gz.nii → output/Tract_Density_Map/Thalamocorticale_links.gz.nii


output/Tract_Density_Map/Thalamocortical_tract_masks/Thalamocorticale_rechts.gz.nii → output/Tract_Density_Map/Thalamocorticale_rechts.gz.nii


output/Tract_Mask_updated/CC_masks_not_cut/CC_MOp(dilated).nii → output/Tract_Mask/CC_MOp(dilated).nii


output/Tract_Mask_updated/CC_masks_cut/CC_MOp(dilated)_cut.tt.nii → output/Tract_Mask/CC_MOp(dilated)_cut.tt.nii


output/Tract_Mask_updated/CC_masks_not_cut/CC_MOp_MOp.tt.nii → output/Tract_Mask/CC_MOp_MOp.tt.nii


output/Tract_Mask_updated/CC_masks_cut/CC_MOp_MOp_cut.tt.nii → output/Tract_Mask/CC_MOp_MOp_cut.tt.nii


output/Tract_Mask_updated/CC_masks_not_cut/CC_MOs_MOs.tt.nii → output/Tract_Mask/CC_MOs_MOs.tt.nii


output/Tract_Mask_updated/CC_masks_cut/CC_MOs_MOs_cut.tt.nii → output/Tract_Mask/CC_MOs_MOs_cut.tt.nii


output/Tract_Mask_updated/CC_masks_not_cut/CC_SSp_ll.tt.nii → output/Tract_Mask/CC_SSp_ll.tt.nii


output/Tract_Mask_updated/CC_masks_cut/CC_SSp_ll_cut.tt.nii → output/Tract_Mask/CC_SSp_ll_cut.tt.nii


output/Tract_Mask_updated/CC_masks_not_cut/CC_SSp_ul.tt.nii → output/Tract_Mask/CC_SSp_ul.tt.nii


output/Tract_Mask_updated/CC_masks_cut/CC_SSp_ul_cut.tt.nii → output/Tract_Mask/CC_SSp_ul_cut.tt.nii





output/Tract_Mask_updated/CST/CST_rechts_CC_cut.nii → output/Tract_Mask/CST_rechts_CC_cut.nii


output/Tract_Mask_updated/CST/CST_rechts_CCasROA.nii → output/Tract_Mask/CST_rechts_CCasROA.nii


output/Tract_Mask_updated/CST/CST_rechts_ROA_CC_fibers_cut.nii → output/Tract_Mask/CST_rechts_ROA_CC_fibers_cut.nii


output/Tract_Mask_updated/Optic_tract/Optic_tract_final.tt.nii → output/Tract_Mask/Optic_tract_final.tt.nii


output/Tract_Mask_updated/Extrapyramidal_tract_masks/Retikulospinal_tract_links.nii → output/Tract_Mask/Retikulospinal_tract_links.nii


output/Tract_Mask_updated/Extrapyramidal_tract_masks/Retikulospinal_tract_rechts.nii → output/Tract_Mask/Retikulospinal_tract_rechts.nii



output/Tract_Mask_updated/Extrapyramidal_tract_masks/Rubrospinal_tract_rechts.nii → output/Tract_Mask/Rubrospinal_tract_rechts.nii





output/Tract_Mask_updated/Thalamocortical_tracts/Thalamocorticale_rechts_SSp_and_SSs_End.nii → output/Tract_Mask/Thalamocorticale_rechts_SSp_and_SSs_End.nii


output/Tract_Mask_updated/Thalamocortical_tracts/Thalamocorticale_rechts_SSp_ll_and_ul_ROI.tt.nii → output/Tract_Mask/Thalamocorticale_rechts_SSp_ll_and_ul_ROI.tt.nii


output/Tract_Mask_updated/Thalamocortical_tracts/Thalamocorticale_rechts_SSp_ul_and_ll_End_0,2.tt.nii → output/Tract_Mask/Thalamocorticale_rechts_SSp_ul_and_ll_End_0,2.tt.nii