Aswendt_Lab/2024_Ruthe_SND

lucaruthe 61a852543a I added all my images from the thesis as PDFs		преди 1 седмица
..
4Presentation	565a9fd388 I added a folder with data from ImageJ	преди 3 месеца
Bilder_Luca_BA	61a852543a I added all my images from the thesis as PDFs	преди 1 седмица
Correlation_with_behavior	e702eb74fb adjusted code and ran it again	преди 3 седмици
Final_Quantitative_output	78815df6e9 new posthoc statistics with dunnett instead of tukey	преди 2 седмици
Final_Quantitative_output_with_figures	136bb6c901 [DATALAD] Recorded changes	преди 3 седмици
ImageJ	61a852543a I added all my images from the thesis as PDFs	преди 1 седмица
MaskComparisons	9bcdec0ea4 added overlap percentage csv	преди 1 месец
Tract_Density_Map	3a7f02f1c4 temp	преди 2 месеца
Tract_Density_Map_registered	0332ba78b3 imagJ	преди 2 месеца
Tract_Mask_NIFTI	c5875af414 added white matter mask	преди 3 седмици
Tract_Mask_registered	dfaee6412d applied mask2mtpl to whitematter mask	преди 3 седмици
Tract_Mask_tt	8634e48d2c [DATALAD] Recorded changes	преди 1 месец
Viral_tracing_flipped	2e82796756 added viraltracin 2 mtpl space filp function	преди 2 месеца
behavior_analysis	83bbe1278b merged behavior data with quantitaitve dti values and corrolated between them with corrections	преди 1 месец
del	2e7526154b I updated all tract masks and added the extrapyramidal tract masks as well as some variations of the CST and thalamocortical tracking.	преди 2 месеца
figures	b1629b4c36 deleted some files	преди 3 месеца
C57BL6_mouse.iso_registerd.nii.gz	45782701c4 updated input and output	преди 4 месеца
Overlap_metrics_of_VT_and_dwi_masks.csv	9bcdec0ea4 added overlap percentage csv	преди 1 месец
README.md	a0f2377f45 I updated the READme file for Outputs	преди 3 месеца
affineTrafo.txt	45782701c4 updated input and output	преди 4 месеца

		
				README.md
			
				Outputs

Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
Nifti_Trakte_V2: These are the updated tracts (NV).
Tract_Density: This folder contains the density of each generated tract mask, saved from DSI-Studio.