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Aswendt_Lab
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2024_Ruthe_SND
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2024_Ruthe_SND
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arefks ff4909cb29 editet statistics to dunnett test to have only time effect control group not all verses all 2 týždňov pred
..
.ipynb_checkpoints e8e54e0207 current state: code is finished for representation 3 mesiacov pred
AIDAmri @ 8e7f9d3597 13cb663094 added all of the code necessery 3 mesiacov pred
mouse_connectivity e8e54e0207 current state: code is finished for representation 3 mesiacov pred
Big_data_mouse_practical_2020_answer.ipynb e8e54e0207 current state: code is finished for representation 3 mesiacov pred
GetQuantitativeValues.py 90c52b4a40 changed getquantitvevalues scode so that white matter tracts are added to the mix 3 týždňov pred
README.md 13cb663094 added all of the code necessery 3 mesiacov pred
correlation_between_bahavior_and_DTI.py e702eb74fb adjusted code and ran it again 3 týždňov pred
correlation_between_bahavior_and_DTI_anovaSpecific.py 132437cf05 final results 1 mesiac pred
heat_maps_correlation.py e702eb74fb adjusted code and ran it again 3 týždňov pred
incooparate_behavior_data.py e702eb74fb adjusted code and ran it again 3 týždňov pred
mask2MTPL.py dfaee6412d applied mask2mtpl to whitematter mask 3 týždňov pred
overlayPlot.py 86fce3a119 current state: code is finished for representation 3 mesiacov pred
plotting_quantitative_dti_values.py ff4909cb29 editet statistics to dunnett test to have only time effect control group not all verses all 2 týždňov pred
proof_of_modalities.py 9bcdec0ea4 added overlap percentage csv 1 mesiac pred
register_masks.py 748f48e806 changed the flip in the anat step of the registration, changed it back to before 1 mesiac pred
remapping_voiting_qc.py 18752865ca changed voitign with script to have additional columns 1 mesiac pred
statsmodel_training.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations 1 mesiac pred
threshold_whitematter.py c5875af414 added white matter mask 3 týždňov pred
transpose_csv.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations 1 mesiac pred
viralTracing2MTPL.py 2e82796756 added viraltracin 2 mtpl space filp function 2 mesiacov pred

README.md

AIDAmri code

This is the code used to process raw Bruker data and to apply transformations from the drawn masks to each individual subject. Note that this is a subdataset linked to the GitHub page of AIDAmri.

The link to the exact branch of the code which was used for this process is: AIDAmri - SND_Mask_trafu branch.

Example usage of code

root@9c22c56092e5:/aida/DATA/code# python mask2MTPL.py -i /aida/DATA/output/Tract_Density -o /aida/DATA/output/Nifti_Tract_density_registered