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GetQuantitativeValues_not_parallel.py 71676560e5 sorted and added parallel quantitative value py file há 2 meses atrás
GetQuantitativeValues_only_in_CST.py 97e21afc33 added some code há 2 semanas atrás
GetQuantitativeValues_only_in_stroke_affected_slices.py 2ea61098ac volcano plots and fa over time há 2 semanas atrás
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README.md 13cb663094 added all of the code necessery há 9 meses atrás
correlation_between_bahavior_and_DTI.py 10a414834a visu jobs há 3 semanas atrás
correlation_between_bahavior_and_DTI_anovaSpecific.py 132437cf05 final results há 7 meses atrás
correlation_fa28_behavior28subtractedbyBaseline.py bdb43f9804 [DATALAD] Recorded changes há 1 semana atrás
correlation_fa28subtractedbyBaseline_behavior28subtractedbyBaseline.py bdb43f9804 [DATALAD] Recorded changes há 1 semana atrás
extract_atlas_fa_regions.py c4c3bd5b9b stuff for poster, atlas fa valus há 2 meses atrás
general_corolation_all_timepoint_together.py c5834f0b56 Adjusted figure sizes há 3 semanas atrás
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mask2MTPL.py dfaee6412d applied mask2mtpl to whitematter mask há 7 meses atrás
merge_csv_sheets.py d1c8a8c45b code to filter high initital impairments há 2 semanas atrás
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predictive_correlation_chronic_vs_fa_acute.py a76ef52966 figure predictive fa with behaviorr há 1 mês atrás
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predictive_correlation_fa3_behavior28subtractedbyBaseline.py bdb43f9804 [DATALAD] Recorded changes há 1 semana atrás
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single_mask_form_allan_atlas_creator.py 1cd13fc10c added amba regoins to the mix há 2 meses atrás
statistical_analysis_of_quantitative_data.py d3c8f1d817 added amba regoins to the mix há 2 meses atrás
statsmodel_training.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations há 7 meses atrás
temp_code.py 062c26905a added new calculation prediction and biomarker approach table style há 1 mês atrás
threshold_whitematter.py c5875af414 added white matter mask há 7 meses atrás
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viralTracing2MTPL.py 2e82796756 added viraltracin 2 mtpl space filp function há 9 meses atrás
visualization_all_timepoints_correlation.py 062c26905a added new calculation prediction and biomarker approach table style há 1 mês atrás
visualization_fa_sham_vs_stroke.py 2ea61098ac volcano plots and fa over time há 2 semanas atrás
visualization_specific_timepoint_correlation.py bdb43f9804 [DATALAD] Recorded changes há 1 semana atrás
vizualization_asymetry_index_fa.py 10a414834a visu jobs há 3 semanas atrás
vizualization_fa28_behavior28subtractedbyBaseline.py 10a414834a visu jobs há 3 semanas atrás
vizualization_fa28subtractedbyBaseline_behavior28subtractedbyBaseline.py bdb43f9804 [DATALAD] Recorded changes há 1 semana atrás
vizualization_fa3_behavior28.py bdb43f9804 [DATALAD] Recorded changes há 1 semana atrás
vizualization_fa3_behavior28subtractedbyBaseline.py bdb43f9804 [DATALAD] Recorded changes há 1 semana atrás
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README.md

AIDAmri code

This is the code used to process raw Bruker data and to apply transformations from the drawn masks to each individual subject. Note that this is a subdataset linked to the GitHub page of AIDAmri.

The link to the exact branch of the code which was used for this process is: AIDAmri - SND_Mask_trafu branch.

Example usage of code

root@9c22c56092e5:/aida/DATA/code# python mask2MTPL.py -i /aida/DATA/output/Tract_Density -o /aida/DATA/output/Nifti_Tract_density_registered