arefks bdb43f9804 [DATALAD] Recorded changes		преди 1 седмица
..
.ipynb_checkpoints	e8e54e0207 current state: code is finished for representation	преди 10 месеца
AIDAmri @ 8e7f9d3597	13cb663094 added all of the code necessery	преди 9 месеца
del	bdb43f9804 [DATALAD] Recorded changes	преди 1 седмица
mouse_connectivity	e8e54e0207 current state: code is finished for representation	преди 10 месеца
testData	27a8ac80ee try and error with R studi	преди 1 месец
Big_data_mouse_practical_2020_answer.ipynb	e8e54e0207 current state: code is finished for representation	преди 10 месеца
GetQuantitativeValues.py	d1c8a8c45b code to filter high initital impairments	преди 2 седмици
GetQuantitativeValues_not_parallel.py	71676560e5 sorted and added parallel quantitative value py file	преди 2 месеца
GetQuantitativeValues_only_in_CST.py	97e21afc33 added some code	преди 2 седмици
GetQuantitativeValues_only_in_stroke_affected_slices.py	2ea61098ac volcano plots and fa over time	преди 2 седмици
LME.R	c039ef3b8d LME	преди 1 месец
README.md	13cb663094 added all of the code necessery	преди 9 месеца
correlation_between_bahavior_and_DTI.py	10a414834a visu jobs	преди 3 седмици
correlation_between_bahavior_and_DTI_anovaSpecific.py	132437cf05 final results	преди 7 месеца
correlation_fa28_behavior28subtractedbyBaseline.py	bdb43f9804 [DATALAD] Recorded changes	преди 1 седмица
correlation_fa28subtractedbyBaseline_behavior28subtractedbyBaseline.py	bdb43f9804 [DATALAD] Recorded changes	преди 1 седмица
extract_atlas_fa_regions.py	c4c3bd5b9b stuff for poster, atlas fa valus	преди 2 месеца
general_corolation_all_timepoint_together.py	c5834f0b56 Adjusted figure sizes	преди 3 седмици
getIncidenceMap.py	1a6c3f835e deleted old things, calculated prediction plots from fa and behaviro, corrected bug in code for replicates when merging	преди 1 месец
heat_maps_correlation.py	c9ecfd427e heatmap adjustment	преди 1 месец
incooparate_behavior_data.py	2ea61098ac volcano plots and fa over time	преди 2 седмици
mask2MTPL.py	dfaee6412d applied mask2mtpl to whitematter mask	преди 7 месеца
merge_csv_sheets.py	d1c8a8c45b code to filter high initital impairments	преди 2 седмици
overlayPlot.py	86fce3a119 current state: code is finished for representation	преди 10 месеца
plotting_quantitative_dti_values.py	bdb43f9804 [DATALAD] Recorded changes	преди 1 седмица
plotting_quantitative_dti_values_partions.py	2ea61098ac volcano plots and fa over time	преди 2 седмици
predictive_correlation_chronic_vs_fa_acute.py	a76ef52966 figure predictive fa with behaviorr	преди 1 месец
predictive_correlation_fa3_behavior28.py	bdb43f9804 [DATALAD] Recorded changes	преди 1 седмица
predictive_correlation_fa3_behavior28subtractedbyBaseline.py	bdb43f9804 [DATALAD] Recorded changes	преди 1 седмица
proof_of_modalities.py	9bcdec0ea4 added overlap percentage csv	преди 8 месеца
register_masks.py	748f48e806 changed the flip in the anat step of the registration, changed it back to before	преди 7 месеца
remapping_voiting_qc.py	4cf036e11b removed bad qc data from merged with behavior csv	преди 1 месец
single_mask_form_allan_atlas_creator.py	1cd13fc10c added amba regoins to the mix	преди 2 месеца
statistical_analysis_of_quantitative_data.py	d3c8f1d817 added amba regoins to the mix	преди 2 месеца
statsmodel_training.py	63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations	преди 7 месеца
temp_code.py	062c26905a added new calculation prediction and biomarker approach table style	преди 1 месец
threshold_whitematter.py	c5875af414 added white matter mask	преди 7 месеца
transpose_csv.py	63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations	преди 7 месеца
ttest_BL_P28_differences.py	2ea61098ac volcano plots and fa over time	преди 2 седмици
ttest_BL_P3_differences.py	9d24cc2f0d added significance tests	преди 1 седмица
ttest_BL_P7_differences.py	9d24cc2f0d added significance tests	преди 1 седмица
ttest_P3_P7_differences.py	9d24cc2f0d added significance tests	преди 1 седмица
ttest_group_differences.py	2ea61098ac volcano plots and fa over time	преди 2 седмици
viralTracing2MTPL.py	2e82796756 added viraltracin 2 mtpl space filp function	преди 9 месеца
visualization_all_timepoints_correlation.py	062c26905a added new calculation prediction and biomarker approach table style	преди 1 месец
visualization_fa_sham_vs_stroke.py	2ea61098ac volcano plots and fa over time	преди 2 седмици
visualization_specific_timepoint_correlation.py	bdb43f9804 [DATALAD] Recorded changes	преди 1 седмица
vizualization_asymetry_index_fa.py	10a414834a visu jobs	преди 3 седмици
vizualization_fa28_behavior28subtractedbyBaseline.py	10a414834a visu jobs	преди 3 седмици
vizualization_fa28subtractedbyBaseline_behavior28subtractedbyBaseline.py	bdb43f9804 [DATALAD] Recorded changes	преди 1 седмица
vizualization_fa3_behavior28.py	bdb43f9804 [DATALAD] Recorded changes	преди 1 седмица
vizualization_fa3_behavior28subtractedbyBaseline.py	bdb43f9804 [DATALAD] Recorded changes	преди 1 седмица
volcano_plot.py	2ea61098ac volcano plots and fa over time	преди 2 седмици
volcano_plot_BL_P28_change.py	2ea61098ac volcano plots and fa over time	преди 2 седмици

AIDAmri code

This is the code used to process raw Bruker data and to apply transformations from the drawn masks to each individual subject. Note that this is a subdataset linked to the GitHub page of AIDAmri.

The link to the exact branch of the code which was used for this process is: AIDAmri - SND_Mask_trafu branch.

Example usage of code

root@9c22c56092e5:/aida/DATA/code# python mask2MTPL.py -i /aida/DATA/output/Tract_Density -o /aida/DATA/output/Nifti_Tract_density_registered

README.md

AIDAmri code

Example usage of code