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2024_Ruthe_SND
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arefks ff4909cb29 editet statistics to dunnett test to have only time effect control group not all verses all il y a 2 semaines
..
.ipynb_checkpoints e8e54e0207 current state: code is finished for representation il y a 3 mois
AIDAmri @ 8e7f9d3597 13cb663094 added all of the code necessery il y a 3 mois
mouse_connectivity e8e54e0207 current state: code is finished for representation il y a 3 mois
Big_data_mouse_practical_2020_answer.ipynb e8e54e0207 current state: code is finished for representation il y a 3 mois
GetQuantitativeValues.py 90c52b4a40 changed getquantitvevalues scode so that white matter tracts are added to the mix il y a 3 semaines
README.md 13cb663094 added all of the code necessery il y a 3 mois
correlation_between_bahavior_and_DTI.py e702eb74fb adjusted code and ran it again il y a 3 semaines
correlation_between_bahavior_and_DTI_anovaSpecific.py 132437cf05 final results il y a 1 mois
heat_maps_correlation.py e702eb74fb adjusted code and ran it again il y a 3 semaines
incooparate_behavior_data.py e702eb74fb adjusted code and ran it again il y a 3 semaines
mask2MTPL.py dfaee6412d applied mask2mtpl to whitematter mask il y a 3 semaines
overlayPlot.py 86fce3a119 current state: code is finished for representation il y a 3 mois
plotting_quantitative_dti_values.py ff4909cb29 editet statistics to dunnett test to have only time effect control group not all verses all il y a 2 semaines
proof_of_modalities.py 9bcdec0ea4 added overlap percentage csv il y a 1 mois
register_masks.py 748f48e806 changed the flip in the anat step of the registration, changed it back to before il y a 1 mois
remapping_voiting_qc.py 18752865ca changed voitign with script to have additional columns il y a 1 mois
statsmodel_training.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations il y a 1 mois
threshold_whitematter.py c5875af414 added white matter mask il y a 3 semaines
transpose_csv.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations il y a 1 mois
viralTracing2MTPL.py 2e82796756 added viraltracin 2 mtpl space filp function il y a 2 mois

README.md

AIDAmri code

This is the code used to process raw Bruker data and to apply transformations from the drawn masks to each individual subject. Note that this is a subdataset linked to the GitHub page of AIDAmri.

The link to the exact branch of the code which was used for this process is: AIDAmri - SND_Mask_trafu branch.

Example usage of code

root@9c22c56092e5:/aida/DATA/code# python mask2MTPL.py -i /aida/DATA/output/Tract_Density -o /aida/DATA/output/Nifti_Tract_density_registered