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Scheduled service maintenance on November 22

On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

We apologize for any inconvenience.

BrainGlobe
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atlases
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atlases
Adam Tyson c9c2386faa Add initial version of prairie vole atlas 3 周之前
LICENSE bbbe2705e7 Initial commit 4 年之前
README.md 9a7faa367f Add table of atlases 3 月之前
admba_3d_e11_5_mouse_16um_v1.0.tar.gz d9af48825c Add ADMBA 2 年之前
admba_3d_e11_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 月之前
admba_3d_e13_5_mouse_16um_v1.0.tar.gz 4caf80d87d Add ADMBA 2 年之前
admba_3d_e13_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 月之前
admba_3d_e15_5_mouse_16um_v1.0.tar.gz ea09e0b215 Add ADMBA 2 年之前
admba_3d_e15_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 月之前
admba_3d_e18_5_mouse_16um_v1.0.tar.gz a0afe3a538 Add ADMBA 2 年之前
admba_3d_e18_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 月之前
admba_3d_p14_mouse_16.752um_v1.0.tar.gz b43a8fb872 Add ADMBA 2 年之前
admba_3d_p14_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 月之前
admba_3d_p28_mouse_16.752um_v1.0.tar.gz bfe2f0afae Add ADMBA 2 年之前
admba_3d_p28_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 月之前
admba_3d_p4_mouse_16.752um_v1.0.tar.gz 3c0b8bffc6 Add ADMBA 2 年之前
admba_3d_p4_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 月之前
admba_3d_p56_mouse_25um_v1.0.tar.gz 4d17a19c23 Add ADMBA 2 年之前
admba_3d_p56_mouse_25um_v1.1.tar.gz 4a38e065b8 updating admba p56 atlas 3 月之前
allen_cord_20um_v1.0.tar.gz b0631317b5 Add cord atlas data 3 年之前
allen_cord_20um_v1.1.tar.gz 582f5b55e6 Add version 1.1 of the allen cord atlas 4 月之前
allen_human_500um_v0.1.tar.gz 60658860f7 Upload files to '' 4 年之前
allen_human_500um_v1.0.tar.gz 089524214a human atlas 1.0 6 月之前
allen_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 年之前
allen_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 年之前
allen_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 年之前
allen_mouse_10um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 年之前
allen_mouse_10um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 年之前
allen_mouse_10um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 年之前
allen_mouse_25um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 年之前
allen_mouse_25um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 年之前
allen_mouse_25um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 年之前
allen_mouse_50um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 年之前
allen_mouse_50um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 年之前
allen_mouse_bluebrain_barrels_10um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 月之前
allen_mouse_bluebrain_barrels_25um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 月之前
azba_zfish_4um_v1.0.tar.gz 0cb83051e3 Add AZBA 3 年之前
azba_zfish_4um_v1.1.tar.gz aea164ecce Upload files to '' 2 年之前
azba_zfish_4um_v1.2.tar.gz 45857b5227 Add AZBA v1.2 6 月之前
example_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 年之前
example_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 年之前
example_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 年之前
kim_dev_mouse_idisco_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 年之前
kim_dev_mouse_idisco_10um_v1.2.tar.gz 966de62130 kim dev v1.2 update 5 月之前
kim_dev_mouse_mri_a0_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 年之前
kim_dev_mouse_mri_a0_10um_v1.2.tar.gz b72bcd8cb5 kim dev v1.2 update 5 月之前
kim_dev_mouse_mri_adc_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 年之前
kim_dev_mouse_mri_adc_10um_v1.2.tar.gz 45aacbfef5 kim dev v1.2 update 5 月之前
kim_dev_mouse_mri_dwi_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 年之前
kim_dev_mouse_mri_dwi_10um_v1.2.tar.gz 9c1e9eec37 kim dev v1.2 update 5 月之前
kim_dev_mouse_mri_fa_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 年之前
kim_dev_mouse_mri_fa_10um_v1.2.tar.gz 6ab45433e4 kim dev v1.2 update 5 月之前
kim_dev_mouse_mri_mtr_10um_v1.1.tar.gz f1aad8bbb1 Add kim developmental magnetric transfer ratio (mtr) atlas 1 年之前
kim_dev_mouse_mri_mtr_10um_v1.2.tar.gz 5ed56d3fa2 kim dev v1.2 update 5 月之前
kim_dev_mouse_mri_t2_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 年之前
kim_dev_mouse_mri_t2_10um_v1.2.tar.gz e4c9102a99 kim dev v1.2 update 5 月之前
kim_dev_mouse_stp_10um_v1.1.tar.gz 6c6f307ea3 Update kim developmental atlases standard template to lower case 1 年之前
kim_dev_mouse_stp_10um_v1.2.tar.gz b68d2dae98 kim dev v1.2 update 5 月之前
kim_mouse_100um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 年之前
kim_mouse_100um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 月之前
kim_mouse_10um_v1.0.tar.gz 97c098b9ab add 10um kim atlas resolution 4 年之前
kim_mouse_10um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 月之前
kim_mouse_25um_v1.0.tar.gz b409cb7307 Add new Kim atlas 4 年之前
kim_mouse_25um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 月之前
kim_mouse_50um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 年之前
kim_mouse_50um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 月之前
kim_unified_25um_v0.1.tar.gz 5b0dc29e2c Upload files to '' 4 年之前
last_versions.conf f97da9b305 Update 'last_versions.conf' 3 周之前
mpin_zfish_1um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 年之前
osten_mouse_100um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 年之前
osten_mouse_10um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 年之前
osten_mouse_25um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 年之前
osten_mouse_50um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 年之前
perens_lsfm_mouse_20um_v1.0.tar.gz 1a3af12ae7 Add perens LSFM atlas 2 年之前
perens_lsfm_mouse_20um_v1.1.tar.gz e70728d374 updating perens_lsfm atlas 6 月之前
perens_lsfm_mouse_20um_v1.2.tar.gz 4dc875e921 perens_lsfm_mouse_20um v1.2 6 月之前
prairie_vole_25um_v1.0.tar.gz c9c2386faa Add initial version of prairie vole atlas 3 周之前
princeton_mouse_20um_v1.0.tar.gz 3af8fd42e1 Add princeton mouse atlas 2 年之前
princeton_mouse_20um_v1.1.tar.gz 2e6d2eef9c updating princeton_mouse_20um_v1.0.tar.gz to v1.1 7 月之前
sju_cavefish_2um_v1.0.tar.gz a605538851 first version of cavefish 5 月之前
unam_axolotl_40um_v1.0.tar.gz 8acfcbeafc add packaged axolotl atlas 3 月之前
whs_sd_rat_39um_v1.0.tar.gz 2f8443ddd5 Add WHS at atlas 3 年之前
whs_sd_rat_39um_v1.1.tar.gz 3216ab9e4e fix naming of rat v 1.1 folder inside tar.gz 1 年之前
whs_sd_rat_39um_v1.2.tar.gz bb180a2abb upload whs rat v1.2 2 月之前

README.md

Brainglobe atlases

Repo containing the atlases formatted to be used within Brainglobe.

A number of atlases are in development, but those available currently are:

Atlas Name Resolution Ages Reference Images
Allen Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Allen Human Brain Atlas 100 micron Adult MRI
Max Planck Zebrafish Brain Atlas 1 micron 6-dpf FISH
Enhanced and Unified Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Smoothed version of the Kim et al. mouse reference atlas 10, 25, 50 and 100 micron P56 STPT
Gubra's LSFM mouse brain atlas 20 micron 8 to 10 weeks post natal LSFM
3D version of the Allen mouse spinal cord atlas 20 x 10 x 10 micron Adult Nissl
AZBA: A 3D Adult Zebrafish Brain Atlas 4 micron 15-16 weeks post natal LSFM
Waxholm Space atlas of the Sprague Dawley rat brain 39 micron P80 MRI
3D Edge-Aware Refined Atlases Derived from the Allen Developing Mouse Brain Atlases 16, 16.75, and 25 micron E13, E15, E18, P4, P14, P28 & P56 Nissl
Princeton Mouse Brain Atlas 20 micron >P56 (older animals included) LSFM
Kim Lab Developmental CCF 10 micron P56 STP, LSFM (iDISCO) and MRI (a0, adc, dwo, fa, MTR, T2)
Blind Mexican Cavefish Brain Atlas 2 micron 1 year IHC
BlueBrain Barrel Cortex Atlas 10 and 25 micron P56 STPT
UNAM Axolotl Brain Atlas 40 micron ~ 3 months post hatching MRI