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Scheduled service maintenance on November 22

On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

We apologize for any inconvenience.

BrainGlobe
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atlases
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Branch: synced/master
Branchit Tagit
atlases
Adam Tyson c9c2386faa Add initial version of prairie vole atlas 3 viikkoa sitten
LICENSE bbbe2705e7 Initial commit 4 vuotta sitten
README.md 9a7faa367f Add table of atlases 3 kuukautta sitten
admba_3d_e11_5_mouse_16um_v1.0.tar.gz d9af48825c Add ADMBA 2 vuotta sitten
admba_3d_e11_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 kuukautta sitten
admba_3d_e13_5_mouse_16um_v1.0.tar.gz 4caf80d87d Add ADMBA 2 vuotta sitten
admba_3d_e13_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 kuukautta sitten
admba_3d_e15_5_mouse_16um_v1.0.tar.gz ea09e0b215 Add ADMBA 2 vuotta sitten
admba_3d_e15_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 kuukautta sitten
admba_3d_e18_5_mouse_16um_v1.0.tar.gz a0afe3a538 Add ADMBA 2 vuotta sitten
admba_3d_e18_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 kuukautta sitten
admba_3d_p14_mouse_16.752um_v1.0.tar.gz b43a8fb872 Add ADMBA 2 vuotta sitten
admba_3d_p14_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 kuukautta sitten
admba_3d_p28_mouse_16.752um_v1.0.tar.gz bfe2f0afae Add ADMBA 2 vuotta sitten
admba_3d_p28_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 kuukautta sitten
admba_3d_p4_mouse_16.752um_v1.0.tar.gz 3c0b8bffc6 Add ADMBA 2 vuotta sitten
admba_3d_p4_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 kuukautta sitten
admba_3d_p56_mouse_25um_v1.0.tar.gz 4d17a19c23 Add ADMBA 2 vuotta sitten
admba_3d_p56_mouse_25um_v1.1.tar.gz 4a38e065b8 updating admba p56 atlas 3 kuukautta sitten
allen_cord_20um_v1.0.tar.gz b0631317b5 Add cord atlas data 3 vuotta sitten
allen_cord_20um_v1.1.tar.gz 582f5b55e6 Add version 1.1 of the allen cord atlas 4 kuukautta sitten
allen_human_500um_v0.1.tar.gz 60658860f7 Upload files to '' 4 vuotta sitten
allen_human_500um_v1.0.tar.gz 089524214a human atlas 1.0 6 kuukautta sitten
allen_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 vuotta sitten
allen_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 vuotta sitten
allen_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 vuotta sitten
allen_mouse_10um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 vuotta sitten
allen_mouse_10um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 vuotta sitten
allen_mouse_10um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 vuotta sitten
allen_mouse_25um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 vuotta sitten
allen_mouse_25um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 vuotta sitten
allen_mouse_25um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 vuotta sitten
allen_mouse_50um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 vuotta sitten
allen_mouse_50um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 vuotta sitten
allen_mouse_bluebrain_barrels_10um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 kuukautta sitten
allen_mouse_bluebrain_barrels_25um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 kuukautta sitten
azba_zfish_4um_v1.0.tar.gz 0cb83051e3 Add AZBA 3 vuotta sitten
azba_zfish_4um_v1.1.tar.gz aea164ecce Upload files to '' 2 vuotta sitten
azba_zfish_4um_v1.2.tar.gz 45857b5227 Add AZBA v1.2 6 kuukautta sitten
example_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 vuotta sitten
example_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 vuotta sitten
example_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 vuotta sitten
kim_dev_mouse_idisco_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 vuosi sitten
kim_dev_mouse_idisco_10um_v1.2.tar.gz 966de62130 kim dev v1.2 update 5 kuukautta sitten
kim_dev_mouse_mri_a0_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 vuosi sitten
kim_dev_mouse_mri_a0_10um_v1.2.tar.gz b72bcd8cb5 kim dev v1.2 update 5 kuukautta sitten
kim_dev_mouse_mri_adc_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 vuosi sitten
kim_dev_mouse_mri_adc_10um_v1.2.tar.gz 45aacbfef5 kim dev v1.2 update 5 kuukautta sitten
kim_dev_mouse_mri_dwi_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 vuosi sitten
kim_dev_mouse_mri_dwi_10um_v1.2.tar.gz 9c1e9eec37 kim dev v1.2 update 5 kuukautta sitten
kim_dev_mouse_mri_fa_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 vuosi sitten
kim_dev_mouse_mri_fa_10um_v1.2.tar.gz 6ab45433e4 kim dev v1.2 update 5 kuukautta sitten
kim_dev_mouse_mri_mtr_10um_v1.1.tar.gz f1aad8bbb1 Add kim developmental magnetric transfer ratio (mtr) atlas 1 vuosi sitten
kim_dev_mouse_mri_mtr_10um_v1.2.tar.gz 5ed56d3fa2 kim dev v1.2 update 5 kuukautta sitten
kim_dev_mouse_mri_t2_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 vuosi sitten
kim_dev_mouse_mri_t2_10um_v1.2.tar.gz e4c9102a99 kim dev v1.2 update 5 kuukautta sitten
kim_dev_mouse_stp_10um_v1.1.tar.gz 6c6f307ea3 Update kim developmental atlases standard template to lower case 1 vuosi sitten
kim_dev_mouse_stp_10um_v1.2.tar.gz b68d2dae98 kim dev v1.2 update 5 kuukautta sitten
kim_mouse_100um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 vuotta sitten
kim_mouse_100um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 kuukautta sitten
kim_mouse_10um_v1.0.tar.gz 97c098b9ab add 10um kim atlas resolution 4 vuotta sitten
kim_mouse_10um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 kuukautta sitten
kim_mouse_25um_v1.0.tar.gz b409cb7307 Add new Kim atlas 4 vuotta sitten
kim_mouse_25um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 kuukautta sitten
kim_mouse_50um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 vuotta sitten
kim_mouse_50um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 kuukautta sitten
kim_unified_25um_v0.1.tar.gz 5b0dc29e2c Upload files to '' 4 vuotta sitten
last_versions.conf f97da9b305 Update 'last_versions.conf' 3 viikkoa sitten
mpin_zfish_1um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 vuotta sitten
osten_mouse_100um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 vuotta sitten
osten_mouse_10um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 vuotta sitten
osten_mouse_25um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 vuotta sitten
osten_mouse_50um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 vuotta sitten
perens_lsfm_mouse_20um_v1.0.tar.gz 1a3af12ae7 Add perens LSFM atlas 2 vuotta sitten
perens_lsfm_mouse_20um_v1.1.tar.gz e70728d374 updating perens_lsfm atlas 6 kuukautta sitten
perens_lsfm_mouse_20um_v1.2.tar.gz 4dc875e921 perens_lsfm_mouse_20um v1.2 6 kuukautta sitten
prairie_vole_25um_v1.0.tar.gz c9c2386faa Add initial version of prairie vole atlas 3 viikkoa sitten
princeton_mouse_20um_v1.0.tar.gz 3af8fd42e1 Add princeton mouse atlas 2 vuotta sitten
princeton_mouse_20um_v1.1.tar.gz 2e6d2eef9c updating princeton_mouse_20um_v1.0.tar.gz to v1.1 7 kuukautta sitten
sju_cavefish_2um_v1.0.tar.gz a605538851 first version of cavefish 5 kuukautta sitten
unam_axolotl_40um_v1.0.tar.gz 8acfcbeafc add packaged axolotl atlas 3 kuukautta sitten
whs_sd_rat_39um_v1.0.tar.gz 2f8443ddd5 Add WHS at atlas 3 vuotta sitten
whs_sd_rat_39um_v1.1.tar.gz 3216ab9e4e fix naming of rat v 1.1 folder inside tar.gz 1 vuosi sitten
whs_sd_rat_39um_v1.2.tar.gz bb180a2abb upload whs rat v1.2 2 kuukautta sitten

README.md

Brainglobe atlases

Repo containing the atlases formatted to be used within Brainglobe.

A number of atlases are in development, but those available currently are:

Atlas Name Resolution Ages Reference Images
Allen Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Allen Human Brain Atlas 100 micron Adult MRI
Max Planck Zebrafish Brain Atlas 1 micron 6-dpf FISH
Enhanced and Unified Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Smoothed version of the Kim et al. mouse reference atlas 10, 25, 50 and 100 micron P56 STPT
Gubra's LSFM mouse brain atlas 20 micron 8 to 10 weeks post natal LSFM
3D version of the Allen mouse spinal cord atlas 20 x 10 x 10 micron Adult Nissl
AZBA: A 3D Adult Zebrafish Brain Atlas 4 micron 15-16 weeks post natal LSFM
Waxholm Space atlas of the Sprague Dawley rat brain 39 micron P80 MRI
3D Edge-Aware Refined Atlases Derived from the Allen Developing Mouse Brain Atlases 16, 16.75, and 25 micron E13, E15, E18, P4, P14, P28 & P56 Nissl
Princeton Mouse Brain Atlas 20 micron >P56 (older animals included) LSFM
Kim Lab Developmental CCF 10 micron P56 STP, LSFM (iDISCO) and MRI (a0, adc, dwo, fa, MTR, T2)
Blind Mexican Cavefish Brain Atlas 2 micron 1 year IHC
BlueBrain Barrel Cortex Atlas 10 and 25 micron P56 STPT
UNAM Axolotl Brain Atlas 40 micron ~ 3 months post hatching MRI