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Scheduled service maintenance on November 22

On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

We apologize for any inconvenience.

BrainGlobe
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atlases
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Клон: synced/master
Клонове Маркери
atlases
Adam Tyson c9c2386faa Add initial version of prairie vole atlas преди 3 седмици
LICENSE bbbe2705e7 Initial commit преди 4 години
README.md 9a7faa367f Add table of atlases преди 3 месеца
admba_3d_e11_5_mouse_16um_v1.0.tar.gz d9af48825c Add ADMBA преди 2 години
admba_3d_e11_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) преди 3 месеца
admba_3d_e13_5_mouse_16um_v1.0.tar.gz 4caf80d87d Add ADMBA преди 2 години
admba_3d_e13_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) преди 3 месеца
admba_3d_e15_5_mouse_16um_v1.0.tar.gz ea09e0b215 Add ADMBA преди 2 години
admba_3d_e15_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) преди 3 месеца
admba_3d_e18_5_mouse_16um_v1.0.tar.gz a0afe3a538 Add ADMBA преди 2 години
admba_3d_e18_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) преди 3 месеца
admba_3d_p14_mouse_16.752um_v1.0.tar.gz b43a8fb872 Add ADMBA преди 2 години
admba_3d_p14_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) преди 3 месеца
admba_3d_p28_mouse_16.752um_v1.0.tar.gz bfe2f0afae Add ADMBA преди 2 години
admba_3d_p28_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) преди 3 месеца
admba_3d_p4_mouse_16.752um_v1.0.tar.gz 3c0b8bffc6 Add ADMBA преди 2 години
admba_3d_p4_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) преди 3 месеца
admba_3d_p56_mouse_25um_v1.0.tar.gz 4d17a19c23 Add ADMBA преди 2 години
admba_3d_p56_mouse_25um_v1.1.tar.gz 4a38e065b8 updating admba p56 atlas преди 3 месеца
allen_cord_20um_v1.0.tar.gz b0631317b5 Add cord atlas data преди 3 години
allen_cord_20um_v1.1.tar.gz 582f5b55e6 Add version 1.1 of the allen cord atlas преди 4 месеца
allen_human_500um_v0.1.tar.gz 60658860f7 Upload files to '' преди 4 години
allen_human_500um_v1.0.tar.gz 089524214a human atlas 1.0 преди 6 месеца
allen_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, преди 4 години
allen_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, преди 4 години
allen_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, преди 4 години
allen_mouse_10um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases преди 4 години
allen_mouse_10um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, преди 4 години
allen_mouse_10um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, преди 4 години
allen_mouse_25um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases преди 4 години
allen_mouse_25um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, преди 4 години
allen_mouse_25um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, преди 4 години
allen_mouse_50um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases преди 4 години
allen_mouse_50um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, преди 4 години
allen_mouse_bluebrain_barrels_10um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases преди 3 месеца
allen_mouse_bluebrain_barrels_25um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases преди 3 месеца
azba_zfish_4um_v1.0.tar.gz 0cb83051e3 Add AZBA преди 3 години
azba_zfish_4um_v1.1.tar.gz aea164ecce Upload files to '' преди 2 години
azba_zfish_4um_v1.2.tar.gz 45857b5227 Add AZBA v1.2 преди 6 месеца
example_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, преди 4 години
example_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, преди 4 години
example_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, преди 4 години
kim_dev_mouse_idisco_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) преди 1 година
kim_dev_mouse_idisco_10um_v1.2.tar.gz 966de62130 kim dev v1.2 update преди 5 месеца
kim_dev_mouse_mri_a0_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) преди 1 година
kim_dev_mouse_mri_a0_10um_v1.2.tar.gz b72bcd8cb5 kim dev v1.2 update преди 5 месеца
kim_dev_mouse_mri_adc_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) преди 1 година
kim_dev_mouse_mri_adc_10um_v1.2.tar.gz 45aacbfef5 kim dev v1.2 update преди 5 месеца
kim_dev_mouse_mri_dwi_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) преди 1 година
kim_dev_mouse_mri_dwi_10um_v1.2.tar.gz 9c1e9eec37 kim dev v1.2 update преди 5 месеца
kim_dev_mouse_mri_fa_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) преди 1 година
kim_dev_mouse_mri_fa_10um_v1.2.tar.gz 6ab45433e4 kim dev v1.2 update преди 5 месеца
kim_dev_mouse_mri_mtr_10um_v1.1.tar.gz f1aad8bbb1 Add kim developmental magnetric transfer ratio (mtr) atlas преди 1 година
kim_dev_mouse_mri_mtr_10um_v1.2.tar.gz 5ed56d3fa2 kim dev v1.2 update преди 5 месеца
kim_dev_mouse_mri_t2_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) преди 1 година
kim_dev_mouse_mri_t2_10um_v1.2.tar.gz e4c9102a99 kim dev v1.2 update преди 5 месеца
kim_dev_mouse_stp_10um_v1.1.tar.gz 6c6f307ea3 Update kim developmental atlases standard template to lower case преди 1 година
kim_dev_mouse_stp_10um_v1.2.tar.gz b68d2dae98 kim dev v1.2 update преди 5 месеца
kim_mouse_100um_v1.0.tar.gz f995007276 add kim atlas resolutions преди 4 години
kim_mouse_100um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases преди 6 месеца
kim_mouse_10um_v1.0.tar.gz 97c098b9ab add 10um kim atlas resolution преди 4 години
kim_mouse_10um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases преди 6 месеца
kim_mouse_25um_v1.0.tar.gz b409cb7307 Add new Kim atlas преди 4 години
kim_mouse_25um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases преди 6 месеца
kim_mouse_50um_v1.0.tar.gz f995007276 add kim atlas resolutions преди 4 години
kim_mouse_50um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases преди 6 месеца
kim_unified_25um_v0.1.tar.gz 5b0dc29e2c Upload files to '' преди 4 години
last_versions.conf f97da9b305 Update 'last_versions.conf' преди 3 седмици
mpin_zfish_1um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, преди 4 години
osten_mouse_100um_v1.1.tar.gz 7c15dc3bf0 update osten atlases преди 3 години
osten_mouse_10um_v1.1.tar.gz 7c15dc3bf0 update osten atlases преди 3 години
osten_mouse_25um_v1.1.tar.gz 7c15dc3bf0 update osten atlases преди 3 години
osten_mouse_50um_v1.1.tar.gz 7c15dc3bf0 update osten atlases преди 3 години
perens_lsfm_mouse_20um_v1.0.tar.gz 1a3af12ae7 Add perens LSFM atlas преди 2 години
perens_lsfm_mouse_20um_v1.1.tar.gz e70728d374 updating perens_lsfm atlas преди 6 месеца
perens_lsfm_mouse_20um_v1.2.tar.gz 4dc875e921 perens_lsfm_mouse_20um v1.2 преди 6 месеца
prairie_vole_25um_v1.0.tar.gz c9c2386faa Add initial version of prairie vole atlas преди 3 седмици
princeton_mouse_20um_v1.0.tar.gz 3af8fd42e1 Add princeton mouse atlas преди 2 години
princeton_mouse_20um_v1.1.tar.gz 2e6d2eef9c updating princeton_mouse_20um_v1.0.tar.gz to v1.1 преди 7 месеца
sju_cavefish_2um_v1.0.tar.gz a605538851 first version of cavefish преди 5 месеца
unam_axolotl_40um_v1.0.tar.gz 8acfcbeafc add packaged axolotl atlas преди 3 месеца
whs_sd_rat_39um_v1.0.tar.gz 2f8443ddd5 Add WHS at atlas преди 3 години
whs_sd_rat_39um_v1.1.tar.gz 3216ab9e4e fix naming of rat v 1.1 folder inside tar.gz преди 1 година
whs_sd_rat_39um_v1.2.tar.gz bb180a2abb upload whs rat v1.2 преди 2 месеца

README.md

Brainglobe atlases

Repo containing the atlases formatted to be used within Brainglobe.

A number of atlases are in development, but those available currently are:

Atlas Name Resolution Ages Reference Images
Allen Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Allen Human Brain Atlas 100 micron Adult MRI
Max Planck Zebrafish Brain Atlas 1 micron 6-dpf FISH
Enhanced and Unified Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Smoothed version of the Kim et al. mouse reference atlas 10, 25, 50 and 100 micron P56 STPT
Gubra's LSFM mouse brain atlas 20 micron 8 to 10 weeks post natal LSFM
3D version of the Allen mouse spinal cord atlas 20 x 10 x 10 micron Adult Nissl
AZBA: A 3D Adult Zebrafish Brain Atlas 4 micron 15-16 weeks post natal LSFM
Waxholm Space atlas of the Sprague Dawley rat brain 39 micron P80 MRI
3D Edge-Aware Refined Atlases Derived from the Allen Developing Mouse Brain Atlases 16, 16.75, and 25 micron E13, E15, E18, P4, P14, P28 & P56 Nissl
Princeton Mouse Brain Atlas 20 micron >P56 (older animals included) LSFM
Kim Lab Developmental CCF 10 micron P56 STP, LSFM (iDISCO) and MRI (a0, adc, dwo, fa, MTR, T2)
Blind Mexican Cavefish Brain Atlas 2 micron 1 year IHC
BlueBrain Barrel Cortex Atlas 10 and 25 micron P56 STPT
UNAM Axolotl Brain Atlas 40 micron ~ 3 months post hatching MRI