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Scheduled service maintenance on November 22

On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

We apologize for any inconvenience.

BrainGlobe
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atlases
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atlases
Adam Tyson c9c2386faa Add initial version of prairie vole atlas 3 недель назад
LICENSE bbbe2705e7 Initial commit 4 лет назад
README.md 9a7faa367f Add table of atlases 3 месяцев назад
admba_3d_e11_5_mouse_16um_v1.0.tar.gz d9af48825c Add ADMBA 2 лет назад
admba_3d_e11_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 месяцев назад
admba_3d_e13_5_mouse_16um_v1.0.tar.gz 4caf80d87d Add ADMBA 2 лет назад
admba_3d_e13_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 месяцев назад
admba_3d_e15_5_mouse_16um_v1.0.tar.gz ea09e0b215 Add ADMBA 2 лет назад
admba_3d_e15_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 месяцев назад
admba_3d_e18_5_mouse_16um_v1.0.tar.gz a0afe3a538 Add ADMBA 2 лет назад
admba_3d_e18_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 месяцев назад
admba_3d_p14_mouse_16.752um_v1.0.tar.gz b43a8fb872 Add ADMBA 2 лет назад
admba_3d_p14_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 месяцев назад
admba_3d_p28_mouse_16.752um_v1.0.tar.gz bfe2f0afae Add ADMBA 2 лет назад
admba_3d_p28_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 месяцев назад
admba_3d_p4_mouse_16.752um_v1.0.tar.gz 3c0b8bffc6 Add ADMBA 2 лет назад
admba_3d_p4_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 месяцев назад
admba_3d_p56_mouse_25um_v1.0.tar.gz 4d17a19c23 Add ADMBA 2 лет назад
admba_3d_p56_mouse_25um_v1.1.tar.gz 4a38e065b8 updating admba p56 atlas 3 месяцев назад
allen_cord_20um_v1.0.tar.gz b0631317b5 Add cord atlas data 3 лет назад
allen_cord_20um_v1.1.tar.gz 582f5b55e6 Add version 1.1 of the allen cord atlas 4 месяцев назад
allen_human_500um_v0.1.tar.gz 60658860f7 Upload files to '' 4 лет назад
allen_human_500um_v1.0.tar.gz 089524214a human atlas 1.0 6 месяцев назад
allen_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 лет назад
allen_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 лет назад
allen_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 лет назад
allen_mouse_10um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 лет назад
allen_mouse_10um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 лет назад
allen_mouse_10um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 лет назад
allen_mouse_25um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 лет назад
allen_mouse_25um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 лет назад
allen_mouse_25um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 лет назад
allen_mouse_50um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 лет назад
allen_mouse_50um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 лет назад
allen_mouse_bluebrain_barrels_10um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 месяцев назад
allen_mouse_bluebrain_barrels_25um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 месяцев назад
azba_zfish_4um_v1.0.tar.gz 0cb83051e3 Add AZBA 3 лет назад
azba_zfish_4um_v1.1.tar.gz aea164ecce Upload files to '' 2 лет назад
azba_zfish_4um_v1.2.tar.gz 45857b5227 Add AZBA v1.2 6 месяцев назад
example_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 лет назад
example_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 лет назад
example_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 лет назад
kim_dev_mouse_idisco_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 год назад
kim_dev_mouse_idisco_10um_v1.2.tar.gz 966de62130 kim dev v1.2 update 5 месяцев назад
kim_dev_mouse_mri_a0_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 год назад
kim_dev_mouse_mri_a0_10um_v1.2.tar.gz b72bcd8cb5 kim dev v1.2 update 5 месяцев назад
kim_dev_mouse_mri_adc_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 год назад
kim_dev_mouse_mri_adc_10um_v1.2.tar.gz 45aacbfef5 kim dev v1.2 update 5 месяцев назад
kim_dev_mouse_mri_dwi_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 год назад
kim_dev_mouse_mri_dwi_10um_v1.2.tar.gz 9c1e9eec37 kim dev v1.2 update 5 месяцев назад
kim_dev_mouse_mri_fa_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 год назад
kim_dev_mouse_mri_fa_10um_v1.2.tar.gz 6ab45433e4 kim dev v1.2 update 5 месяцев назад
kim_dev_mouse_mri_mtr_10um_v1.1.tar.gz f1aad8bbb1 Add kim developmental magnetric transfer ratio (mtr) atlas 1 год назад
kim_dev_mouse_mri_mtr_10um_v1.2.tar.gz 5ed56d3fa2 kim dev v1.2 update 5 месяцев назад
kim_dev_mouse_mri_t2_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 год назад
kim_dev_mouse_mri_t2_10um_v1.2.tar.gz e4c9102a99 kim dev v1.2 update 5 месяцев назад
kim_dev_mouse_stp_10um_v1.1.tar.gz 6c6f307ea3 Update kim developmental atlases standard template to lower case 1 год назад
kim_dev_mouse_stp_10um_v1.2.tar.gz b68d2dae98 kim dev v1.2 update 5 месяцев назад
kim_mouse_100um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 лет назад
kim_mouse_100um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 месяцев назад
kim_mouse_10um_v1.0.tar.gz 97c098b9ab add 10um kim atlas resolution 4 лет назад
kim_mouse_10um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 месяцев назад
kim_mouse_25um_v1.0.tar.gz b409cb7307 Add new Kim atlas 4 лет назад
kim_mouse_25um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 месяцев назад
kim_mouse_50um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 лет назад
kim_mouse_50um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 месяцев назад
kim_unified_25um_v0.1.tar.gz 5b0dc29e2c Upload files to '' 4 лет назад
last_versions.conf f97da9b305 Update 'last_versions.conf' 3 недель назад
mpin_zfish_1um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 лет назад
osten_mouse_100um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 лет назад
osten_mouse_10um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 лет назад
osten_mouse_25um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 лет назад
osten_mouse_50um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 лет назад
perens_lsfm_mouse_20um_v1.0.tar.gz 1a3af12ae7 Add perens LSFM atlas 2 лет назад
perens_lsfm_mouse_20um_v1.1.tar.gz e70728d374 updating perens_lsfm atlas 6 месяцев назад
perens_lsfm_mouse_20um_v1.2.tar.gz 4dc875e921 perens_lsfm_mouse_20um v1.2 6 месяцев назад
prairie_vole_25um_v1.0.tar.gz c9c2386faa Add initial version of prairie vole atlas 3 недель назад
princeton_mouse_20um_v1.0.tar.gz 3af8fd42e1 Add princeton mouse atlas 2 лет назад
princeton_mouse_20um_v1.1.tar.gz 2e6d2eef9c updating princeton_mouse_20um_v1.0.tar.gz to v1.1 7 месяцев назад
sju_cavefish_2um_v1.0.tar.gz a605538851 first version of cavefish 5 месяцев назад
unam_axolotl_40um_v1.0.tar.gz 8acfcbeafc add packaged axolotl atlas 3 месяцев назад
whs_sd_rat_39um_v1.0.tar.gz 2f8443ddd5 Add WHS at atlas 3 лет назад
whs_sd_rat_39um_v1.1.tar.gz 3216ab9e4e fix naming of rat v 1.1 folder inside tar.gz 1 год назад
whs_sd_rat_39um_v1.2.tar.gz bb180a2abb upload whs rat v1.2 2 месяцев назад

README.md

Brainglobe atlases

Repo containing the atlases formatted to be used within Brainglobe.

A number of atlases are in development, but those available currently are:

Atlas Name Resolution Ages Reference Images
Allen Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Allen Human Brain Atlas 100 micron Adult MRI
Max Planck Zebrafish Brain Atlas 1 micron 6-dpf FISH
Enhanced and Unified Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Smoothed version of the Kim et al. mouse reference atlas 10, 25, 50 and 100 micron P56 STPT
Gubra's LSFM mouse brain atlas 20 micron 8 to 10 weeks post natal LSFM
3D version of the Allen mouse spinal cord atlas 20 x 10 x 10 micron Adult Nissl
AZBA: A 3D Adult Zebrafish Brain Atlas 4 micron 15-16 weeks post natal LSFM
Waxholm Space atlas of the Sprague Dawley rat brain 39 micron P80 MRI
3D Edge-Aware Refined Atlases Derived from the Allen Developing Mouse Brain Atlases 16, 16.75, and 25 micron E13, E15, E18, P4, P14, P28 & P56 Nissl
Princeton Mouse Brain Atlas 20 micron >P56 (older animals included) LSFM
Kim Lab Developmental CCF 10 micron P56 STP, LSFM (iDISCO) and MRI (a0, adc, dwo, fa, MTR, T2)
Blind Mexican Cavefish Brain Atlas 2 micron 1 year IHC
BlueBrain Barrel Cortex Atlas 10 and 25 micron P56 STPT
UNAM Axolotl Brain Atlas 40 micron ~ 3 months post hatching MRI