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Scheduled service maintenance on November 22

On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

We apologize for any inconvenience.

BrainGlobe
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atlases
6
1
Креирај огранак 2
Датотеке Дискусије 0 Захтеви за спајање 0 Вики

Нема описа

Грана: synced/master
Гране Ознаке
atlases
Adam Tyson c9c2386faa Add initial version of prairie vole atlas пре 3 недеља
LICENSE bbbe2705e7 Initial commit пре 4 година
README.md 9a7faa367f Add table of atlases пре 3 месеци
admba_3d_e11_5_mouse_16um_v1.0.tar.gz d9af48825c Add ADMBA пре 2 година
admba_3d_e11_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) пре 3 месеци
admba_3d_e13_5_mouse_16um_v1.0.tar.gz 4caf80d87d Add ADMBA пре 2 година
admba_3d_e13_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) пре 3 месеци
admba_3d_e15_5_mouse_16um_v1.0.tar.gz ea09e0b215 Add ADMBA пре 2 година
admba_3d_e15_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) пре 3 месеци
admba_3d_e18_5_mouse_16um_v1.0.tar.gz a0afe3a538 Add ADMBA пре 2 година
admba_3d_e18_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) пре 3 месеци
admba_3d_p14_mouse_16.752um_v1.0.tar.gz b43a8fb872 Add ADMBA пре 2 година
admba_3d_p14_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) пре 3 месеци
admba_3d_p28_mouse_16.752um_v1.0.tar.gz bfe2f0afae Add ADMBA пре 2 година
admba_3d_p28_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) пре 3 месеци
admba_3d_p4_mouse_16.752um_v1.0.tar.gz 3c0b8bffc6 Add ADMBA пре 2 година
admba_3d_p4_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) пре 3 месеци
admba_3d_p56_mouse_25um_v1.0.tar.gz 4d17a19c23 Add ADMBA пре 2 година
admba_3d_p56_mouse_25um_v1.1.tar.gz 4a38e065b8 updating admba p56 atlas пре 3 месеци
allen_cord_20um_v1.0.tar.gz b0631317b5 Add cord atlas data пре 3 година
allen_cord_20um_v1.1.tar.gz 582f5b55e6 Add version 1.1 of the allen cord atlas пре 4 месеци
allen_human_500um_v0.1.tar.gz 60658860f7 Upload files to '' пре 4 година
allen_human_500um_v1.0.tar.gz 089524214a human atlas 1.0 пре 6 месеци
allen_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, пре 4 година
allen_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, пре 4 година
allen_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, пре 4 година
allen_mouse_10um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases пре 4 година
allen_mouse_10um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, пре 4 година
allen_mouse_10um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, пре 4 година
allen_mouse_25um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases пре 4 година
allen_mouse_25um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, пре 4 година
allen_mouse_25um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, пре 4 година
allen_mouse_50um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases пре 4 година
allen_mouse_50um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, пре 4 година
allen_mouse_bluebrain_barrels_10um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases пре 3 месеци
allen_mouse_bluebrain_barrels_25um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases пре 3 месеци
azba_zfish_4um_v1.0.tar.gz 0cb83051e3 Add AZBA пре 3 година
azba_zfish_4um_v1.1.tar.gz aea164ecce Upload files to '' пре 2 година
azba_zfish_4um_v1.2.tar.gz 45857b5227 Add AZBA v1.2 пре 6 месеци
example_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, пре 4 година
example_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, пре 4 година
example_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, пре 4 година
kim_dev_mouse_idisco_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) пре 1 година
kim_dev_mouse_idisco_10um_v1.2.tar.gz 966de62130 kim dev v1.2 update пре 5 месеци
kim_dev_mouse_mri_a0_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) пре 1 година
kim_dev_mouse_mri_a0_10um_v1.2.tar.gz b72bcd8cb5 kim dev v1.2 update пре 5 месеци
kim_dev_mouse_mri_adc_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) пре 1 година
kim_dev_mouse_mri_adc_10um_v1.2.tar.gz 45aacbfef5 kim dev v1.2 update пре 5 месеци
kim_dev_mouse_mri_dwi_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) пре 1 година
kim_dev_mouse_mri_dwi_10um_v1.2.tar.gz 9c1e9eec37 kim dev v1.2 update пре 5 месеци
kim_dev_mouse_mri_fa_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) пре 1 година
kim_dev_mouse_mri_fa_10um_v1.2.tar.gz 6ab45433e4 kim dev v1.2 update пре 5 месеци
kim_dev_mouse_mri_mtr_10um_v1.1.tar.gz f1aad8bbb1 Add kim developmental magnetric transfer ratio (mtr) atlas пре 1 година
kim_dev_mouse_mri_mtr_10um_v1.2.tar.gz 5ed56d3fa2 kim dev v1.2 update пре 5 месеци
kim_dev_mouse_mri_t2_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) пре 1 година
kim_dev_mouse_mri_t2_10um_v1.2.tar.gz e4c9102a99 kim dev v1.2 update пре 5 месеци
kim_dev_mouse_stp_10um_v1.1.tar.gz 6c6f307ea3 Update kim developmental atlases standard template to lower case пре 1 година
kim_dev_mouse_stp_10um_v1.2.tar.gz b68d2dae98 kim dev v1.2 update пре 5 месеци
kim_mouse_100um_v1.0.tar.gz f995007276 add kim atlas resolutions пре 4 година
kim_mouse_100um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases пре 6 месеци
kim_mouse_10um_v1.0.tar.gz 97c098b9ab add 10um kim atlas resolution пре 4 година
kim_mouse_10um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases пре 6 месеци
kim_mouse_25um_v1.0.tar.gz b409cb7307 Add new Kim atlas пре 4 година
kim_mouse_25um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases пре 6 месеци
kim_mouse_50um_v1.0.tar.gz f995007276 add kim atlas resolutions пре 4 година
kim_mouse_50um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases пре 6 месеци
kim_unified_25um_v0.1.tar.gz 5b0dc29e2c Upload files to '' пре 4 година
last_versions.conf f97da9b305 Update 'last_versions.conf' пре 3 недеља
mpin_zfish_1um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, пре 4 година
osten_mouse_100um_v1.1.tar.gz 7c15dc3bf0 update osten atlases пре 3 година
osten_mouse_10um_v1.1.tar.gz 7c15dc3bf0 update osten atlases пре 3 година
osten_mouse_25um_v1.1.tar.gz 7c15dc3bf0 update osten atlases пре 3 година
osten_mouse_50um_v1.1.tar.gz 7c15dc3bf0 update osten atlases пре 3 година
perens_lsfm_mouse_20um_v1.0.tar.gz 1a3af12ae7 Add perens LSFM atlas пре 2 година
perens_lsfm_mouse_20um_v1.1.tar.gz e70728d374 updating perens_lsfm atlas пре 6 месеци
perens_lsfm_mouse_20um_v1.2.tar.gz 4dc875e921 perens_lsfm_mouse_20um v1.2 пре 6 месеци
prairie_vole_25um_v1.0.tar.gz c9c2386faa Add initial version of prairie vole atlas пре 3 недеља
princeton_mouse_20um_v1.0.tar.gz 3af8fd42e1 Add princeton mouse atlas пре 2 година
princeton_mouse_20um_v1.1.tar.gz 2e6d2eef9c updating princeton_mouse_20um_v1.0.tar.gz to v1.1 пре 7 месеци
sju_cavefish_2um_v1.0.tar.gz a605538851 first version of cavefish пре 5 месеци
unam_axolotl_40um_v1.0.tar.gz 8acfcbeafc add packaged axolotl atlas пре 3 месеци
whs_sd_rat_39um_v1.0.tar.gz 2f8443ddd5 Add WHS at atlas пре 3 година
whs_sd_rat_39um_v1.1.tar.gz 3216ab9e4e fix naming of rat v 1.1 folder inside tar.gz пре 1 година
whs_sd_rat_39um_v1.2.tar.gz bb180a2abb upload whs rat v1.2 пре 2 месеци

README.md

Brainglobe atlases

Repo containing the atlases formatted to be used within Brainglobe.

A number of atlases are in development, but those available currently are:

Atlas Name Resolution Ages Reference Images
Allen Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Allen Human Brain Atlas 100 micron Adult MRI
Max Planck Zebrafish Brain Atlas 1 micron 6-dpf FISH
Enhanced and Unified Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Smoothed version of the Kim et al. mouse reference atlas 10, 25, 50 and 100 micron P56 STPT
Gubra's LSFM mouse brain atlas 20 micron 8 to 10 weeks post natal LSFM
3D version of the Allen mouse spinal cord atlas 20 x 10 x 10 micron Adult Nissl
AZBA: A 3D Adult Zebrafish Brain Atlas 4 micron 15-16 weeks post natal LSFM
Waxholm Space atlas of the Sprague Dawley rat brain 39 micron P80 MRI
3D Edge-Aware Refined Atlases Derived from the Allen Developing Mouse Brain Atlases 16, 16.75, and 25 micron E13, E15, E18, P4, P14, P28 & P56 Nissl
Princeton Mouse Brain Atlas 20 micron >P56 (older animals included) LSFM
Kim Lab Developmental CCF 10 micron P56 STP, LSFM (iDISCO) and MRI (a0, adc, dwo, fa, MTR, T2)
Blind Mexican Cavefish Brain Atlas 2 micron 1 year IHC
BlueBrain Barrel Cortex Atlas 10 and 25 micron P56 STPT
UNAM Axolotl Brain Atlas 40 micron ~ 3 months post hatching MRI