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BrainGlobe
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atlases
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انشعاب 2
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شاخه: synced/master
شاخه‌ها تگ‌ها
atlases
Adam Tyson c9c2386faa Add initial version of prairie vole atlas 3 هفته پیش
LICENSE bbbe2705e7 Initial commit 4 سال پیش
README.md 9a7faa367f Add table of atlases 3 ماه پیش
admba_3d_e11_5_mouse_16um_v1.0.tar.gz d9af48825c Add ADMBA 2 سال پیش
admba_3d_e11_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 ماه پیش
admba_3d_e13_5_mouse_16um_v1.0.tar.gz 4caf80d87d Add ADMBA 2 سال پیش
admba_3d_e13_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 ماه پیش
admba_3d_e15_5_mouse_16um_v1.0.tar.gz ea09e0b215 Add ADMBA 2 سال پیش
admba_3d_e15_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 ماه پیش
admba_3d_e18_5_mouse_16um_v1.0.tar.gz a0afe3a538 Add ADMBA 2 سال پیش
admba_3d_e18_5_mouse_16um_v1.1.tar.gz 133dad92bf updating admba atlases (e11-18) 3 ماه پیش
admba_3d_p14_mouse_16.752um_v1.0.tar.gz b43a8fb872 Add ADMBA 2 سال پیش
admba_3d_p14_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 ماه پیش
admba_3d_p28_mouse_16.752um_v1.0.tar.gz bfe2f0afae Add ADMBA 2 سال پیش
admba_3d_p28_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 ماه پیش
admba_3d_p4_mouse_16.752um_v1.0.tar.gz 3c0b8bffc6 Add ADMBA 2 سال پیش
admba_3d_p4_mouse_16.752um_v1.1.tar.gz fd59b6c969 updating admba atlases (p4-28) 3 ماه پیش
admba_3d_p56_mouse_25um_v1.0.tar.gz 4d17a19c23 Add ADMBA 2 سال پیش
admba_3d_p56_mouse_25um_v1.1.tar.gz 4a38e065b8 updating admba p56 atlas 3 ماه پیش
allen_cord_20um_v1.0.tar.gz b0631317b5 Add cord atlas data 3 سال پیش
allen_cord_20um_v1.1.tar.gz 582f5b55e6 Add version 1.1 of the allen cord atlas 4 ماه پیش
allen_human_500um_v0.1.tar.gz 60658860f7 Upload files to '' 4 سال پیش
allen_human_500um_v1.0.tar.gz 089524214a human atlas 1.0 6 ماه پیش
allen_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 سال پیش
allen_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 سال پیش
allen_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 سال پیش
allen_mouse_10um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 سال پیش
allen_mouse_10um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 سال پیش
allen_mouse_10um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 سال پیش
allen_mouse_25um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 سال پیش
allen_mouse_25um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 سال پیش
allen_mouse_25um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 سال پیش
allen_mouse_50um_v0.3.tar.gz 8b6b9768f7 upload renamed allen mouse atlases 4 سال پیش
allen_mouse_50um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 سال پیش
allen_mouse_bluebrain_barrels_10um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 ماه پیش
allen_mouse_bluebrain_barrels_25um_v1.0.tar.gz c3b4c05fc5 Add v1.0 of barrel atlases 3 ماه پیش
azba_zfish_4um_v1.0.tar.gz 0cb83051e3 Add AZBA 3 سال پیش
azba_zfish_4um_v1.1.tar.gz aea164ecce Upload files to '' 2 سال پیش
azba_zfish_4um_v1.2.tar.gz 45857b5227 Add AZBA v1.2 6 ماه پیش
example_mouse_100um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 سال پیش
example_mouse_100um_v1.1.tar.gz 5e7eba7936 Updated: allen_mouse_10um_v1.1.tar, allen_mouse_25um_v1.1.tar, allen_mouse_100um_v1.1.tar, example_mouse_100um_v1.1.tar, 4 سال پیش
example_mouse_100um_v1.2.tar.gz 3be5dae7a3 Updated: allen_mouse_10um_v1.2.tar, allen_mouse_25um_v1.2.tar, allen_mouse_50um_v1.2.tar, allen_mouse_100um_v1.2.tar, example_mouse_100um_v1.2.tar, 4 سال پیش
kim_dev_mouse_idisco_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 سال پیش
kim_dev_mouse_idisco_10um_v1.2.tar.gz 966de62130 kim dev v1.2 update 5 ماه پیش
kim_dev_mouse_mri_a0_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 سال پیش
kim_dev_mouse_mri_a0_10um_v1.2.tar.gz b72bcd8cb5 kim dev v1.2 update 5 ماه پیش
kim_dev_mouse_mri_adc_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 سال پیش
kim_dev_mouse_mri_adc_10um_v1.2.tar.gz 45aacbfef5 kim dev v1.2 update 5 ماه پیش
kim_dev_mouse_mri_dwi_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 سال پیش
kim_dev_mouse_mri_dwi_10um_v1.2.tar.gz 9c1e9eec37 kim dev v1.2 update 5 ماه پیش
kim_dev_mouse_mri_fa_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 سال پیش
kim_dev_mouse_mri_fa_10um_v1.2.tar.gz 6ab45433e4 kim dev v1.2 update 5 ماه پیش
kim_dev_mouse_mri_mtr_10um_v1.1.tar.gz f1aad8bbb1 Add kim developmental magnetric transfer ratio (mtr) atlas 1 سال پیش
kim_dev_mouse_mri_mtr_10um_v1.2.tar.gz 5ed56d3fa2 kim dev v1.2 update 5 ماه پیش
kim_dev_mouse_mri_t2_10um_v1.1.tar.gz 23de7549c4 Add kim developmental atlases (standard template, idisco and 5 MRI) 1 سال پیش
kim_dev_mouse_mri_t2_10um_v1.2.tar.gz e4c9102a99 kim dev v1.2 update 5 ماه پیش
kim_dev_mouse_stp_10um_v1.1.tar.gz 6c6f307ea3 Update kim developmental atlases standard template to lower case 1 سال پیش
kim_dev_mouse_stp_10um_v1.2.tar.gz b68d2dae98 kim dev v1.2 update 5 ماه پیش
kim_mouse_100um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 سال پیش
kim_mouse_100um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 ماه پیش
kim_mouse_10um_v1.0.tar.gz 97c098b9ab add 10um kim atlas resolution 4 سال پیش
kim_mouse_10um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 ماه پیش
kim_mouse_25um_v1.0.tar.gz b409cb7307 Add new Kim atlas 4 سال پیش
kim_mouse_25um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 ماه پیش
kim_mouse_50um_v1.0.tar.gz f995007276 add kim atlas resolutions 4 سال پیش
kim_mouse_50um_v1.1.tar.gz abfe95d684 updating kim_mouse atlases 6 ماه پیش
kim_unified_25um_v0.1.tar.gz 5b0dc29e2c Upload files to '' 4 سال پیش
last_versions.conf f97da9b305 Update 'last_versions.conf' 3 هفته پیش
mpin_zfish_1um_v1.0.tar.gz 79cb1c496d Updated: /Users/luigipetrucco/bg_auto/tempdir/mpin_zfish_1um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/allen_mouse_100um_v1.0.tar.gz.name, /Users/luigipetrucco/bg_auto/tempdir/example_mouse_100um_v1.0.tar.gz.name, 4 سال پیش
osten_mouse_100um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 سال پیش
osten_mouse_10um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 سال پیش
osten_mouse_25um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 سال پیش
osten_mouse_50um_v1.1.tar.gz 7c15dc3bf0 update osten atlases 3 سال پیش
perens_lsfm_mouse_20um_v1.0.tar.gz 1a3af12ae7 Add perens LSFM atlas 2 سال پیش
perens_lsfm_mouse_20um_v1.1.tar.gz e70728d374 updating perens_lsfm atlas 6 ماه پیش
perens_lsfm_mouse_20um_v1.2.tar.gz 4dc875e921 perens_lsfm_mouse_20um v1.2 6 ماه پیش
prairie_vole_25um_v1.0.tar.gz c9c2386faa Add initial version of prairie vole atlas 3 هفته پیش
princeton_mouse_20um_v1.0.tar.gz 3af8fd42e1 Add princeton mouse atlas 2 سال پیش
princeton_mouse_20um_v1.1.tar.gz 2e6d2eef9c updating princeton_mouse_20um_v1.0.tar.gz to v1.1 7 ماه پیش
sju_cavefish_2um_v1.0.tar.gz a605538851 first version of cavefish 5 ماه پیش
unam_axolotl_40um_v1.0.tar.gz 8acfcbeafc add packaged axolotl atlas 3 ماه پیش
whs_sd_rat_39um_v1.0.tar.gz 2f8443ddd5 Add WHS at atlas 3 سال پیش
whs_sd_rat_39um_v1.1.tar.gz 3216ab9e4e fix naming of rat v 1.1 folder inside tar.gz 1 سال پیش
whs_sd_rat_39um_v1.2.tar.gz bb180a2abb upload whs rat v1.2 2 ماه پیش

README.md

Brainglobe atlases

Repo containing the atlases formatted to be used within Brainglobe.

A number of atlases are in development, but those available currently are:

Atlas Name Resolution Ages Reference Images
Allen Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Allen Human Brain Atlas 100 micron Adult MRI
Max Planck Zebrafish Brain Atlas 1 micron 6-dpf FISH
Enhanced and Unified Mouse Brain Atlas 10, 25, 50, and 100 micron P56 STPT
Smoothed version of the Kim et al. mouse reference atlas 10, 25, 50 and 100 micron P56 STPT
Gubra's LSFM mouse brain atlas 20 micron 8 to 10 weeks post natal LSFM
3D version of the Allen mouse spinal cord atlas 20 x 10 x 10 micron Adult Nissl
AZBA: A 3D Adult Zebrafish Brain Atlas 4 micron 15-16 weeks post natal LSFM
Waxholm Space atlas of the Sprague Dawley rat brain 39 micron P80 MRI
3D Edge-Aware Refined Atlases Derived from the Allen Developing Mouse Brain Atlases 16, 16.75, and 25 micron E13, E15, E18, P4, P14, P28 & P56 Nissl
Princeton Mouse Brain Atlas 20 micron >P56 (older animals included) LSFM
Kim Lab Developmental CCF 10 micron P56 STP, LSFM (iDISCO) and MRI (a0, adc, dwo, fa, MTR, T2)
Blind Mexican Cavefish Brain Atlas 2 micron 1 year IHC
BlueBrain Barrel Cortex Atlas 10 and 25 micron P56 STPT
UNAM Axolotl Brain Atlas 40 micron ~ 3 months post hatching MRI