arefks c4c3bd5b9b stuff for poster, atlas fa valus		2 ماه پیش
..
.ipynb_checkpoints	e8e54e0207 current state: code is finished for representation	9 ماه پیش
AIDAmri @ 8e7f9d3597	13cb663094 added all of the code necessery	9 ماه پیش
mouse_connectivity	e8e54e0207 current state: code is finished for representation	9 ماه پیش
Big_data_mouse_practical_2020_answer.ipynb	e8e54e0207 current state: code is finished for representation	9 ماه پیش
GetQuantitativeValues.py	90c52b4a40 changed getquantitvevalues scode so that white matter tracts are added to the mix	6 ماه پیش
README.md	13cb663094 added all of the code necessery	9 ماه پیش
correlation_between_bahavior_and_DTI.py	e702eb74fb adjusted code and ran it again	6 ماه پیش
correlation_between_bahavior_and_DTI_anovaSpecific.py	132437cf05 final results	7 ماه پیش
extract_atlas_fa_regions.py	c4c3bd5b9b stuff for poster, atlas fa valus	2 ماه پیش
heat_maps_correlation.py	e702eb74fb adjusted code and ran it again	6 ماه پیش
incooparate_behavior_data.py	e702eb74fb adjusted code and ran it again	6 ماه پیش
mask2MTPL.py	dfaee6412d applied mask2mtpl to whitematter mask	6 ماه پیش
overlayPlot.py	86fce3a119 current state: code is finished for representation	9 ماه پیش
plotting_quantitative_dti_values.py	ff4909cb29 editet statistics to dunnett test to have only time effect control group not all verses all	6 ماه پیش
plotting_quantitative_dti_values_atlas_based.py	c4c3bd5b9b stuff for poster, atlas fa valus	2 ماه پیش
proof_of_modalities.py	9bcdec0ea4 added overlap percentage csv	7 ماه پیش
register_masks.py	748f48e806 changed the flip in the anat step of the registration, changed it back to before	7 ماه پیش
remapping_voiting_qc.py	18752865ca changed voitign with script to have additional columns	7 ماه پیش
statsmodel_training.py	63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations	7 ماه پیش
threshold_whitematter.py	c5875af414 added white matter mask	6 ماه پیش
transpose_csv.py	63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations	7 ماه پیش
viralTracing2MTPL.py	2e82796756 added viraltracin 2 mtpl space filp function	8 ماه پیش

AIDAmri code

This is the code used to process raw Bruker data and to apply transformations from the drawn masks to each individual subject. Note that this is a subdataset linked to the GitHub page of AIDAmri.

The link to the exact branch of the code which was used for this process is: AIDAmri - SND_Mask_trafu branch.

Example usage of code

root@9c22c56092e5:/aida/DATA/code# python mask2MTPL.py -i /aida/DATA/output/Tract_Density -o /aida/DATA/output/Nifti_Tract_density_registered

README.md

AIDAmri code

Example usage of code