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arefks c4c3bd5b9b stuff for poster, atlas fa valus hace 2 meses
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.ipynb_checkpoints e8e54e0207 current state: code is finished for representation hace 9 meses
AIDAmri @ 8e7f9d3597 13cb663094 added all of the code necessery hace 9 meses
mouse_connectivity e8e54e0207 current state: code is finished for representation hace 9 meses
Big_data_mouse_practical_2020_answer.ipynb e8e54e0207 current state: code is finished for representation hace 9 meses
GetQuantitativeValues.py 90c52b4a40 changed getquantitvevalues scode so that white matter tracts are added to the mix hace 6 meses
README.md 13cb663094 added all of the code necessery hace 9 meses
correlation_between_bahavior_and_DTI.py e702eb74fb adjusted code and ran it again hace 6 meses
correlation_between_bahavior_and_DTI_anovaSpecific.py 132437cf05 final results hace 7 meses
extract_atlas_fa_regions.py c4c3bd5b9b stuff for poster, atlas fa valus hace 2 meses
heat_maps_correlation.py e702eb74fb adjusted code and ran it again hace 6 meses
incooparate_behavior_data.py e702eb74fb adjusted code and ran it again hace 6 meses
mask2MTPL.py dfaee6412d applied mask2mtpl to whitematter mask hace 6 meses
overlayPlot.py 86fce3a119 current state: code is finished for representation hace 9 meses
plotting_quantitative_dti_values.py ff4909cb29 editet statistics to dunnett test to have only time effect control group not all verses all hace 6 meses
plotting_quantitative_dti_values_atlas_based.py c4c3bd5b9b stuff for poster, atlas fa valus hace 2 meses
proof_of_modalities.py 9bcdec0ea4 added overlap percentage csv hace 7 meses
register_masks.py 748f48e806 changed the flip in the anat step of the registration, changed it back to before hace 7 meses
remapping_voiting_qc.py 18752865ca changed voitign with script to have additional columns hace 7 meses
statsmodel_training.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations hace 7 meses
threshold_whitematter.py c5875af414 added white matter mask hace 6 meses
transpose_csv.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations hace 7 meses
viralTracing2MTPL.py 2e82796756 added viraltracin 2 mtpl space filp function hace 8 meses

README.md

AIDAmri code

This is the code used to process raw Bruker data and to apply transformations from the drawn masks to each individual subject. Note that this is a subdataset linked to the GitHub page of AIDAmri.

The link to the exact branch of the code which was used for this process is: AIDAmri - SND_Mask_trafu branch.

Example usage of code

root@9c22c56092e5:/aida/DATA/code# python mask2MTPL.py -i /aida/DATA/output/Tract_Density -o /aida/DATA/output/Nifti_Tract_density_registered