2024_Ruthe_SND/code/incooparate_behavior_data.py

# -*- coding: utf-8 -*-
"""
Created on Mon Apr  8 13:23:12 2024

@author: arefks
"""

import os
import pandas as pd

# Get the directory where the code file is located
code_dir = os.path.dirname(os.path.abspath(__file__))

# Get the parent directory of the code directory
parent_dir = os.path.dirname(code_dir)

# Read the behavior data CSV file into a Pandas DataFrame
input_file_quant = os.path.join(parent_dir, 'output',"Final_Quantitative_output" ,'Quantitative_results_from_dwi_processing.csv')
df_q = pd.read_csv(input_file_quant)

# Read the behavior data CSV file into a Pandas DataFrame
input_file_behav = os.path.join(parent_dir, 'output',"behavior_analysis" ,'behavior_data_processed.csv')
df_b = pd.read_csv(input_file_behav)

# Merge the columns from df_b into df_q based on subjectID and merged_timepoint columns
merged_df = pd.merge(df_q, df_b[['subjectID', 'merged_timepoint', 'paw_drag', 'hindlimb_drop', 'foot_faults','paw_dragZ-score', 'hindlimb_dropZ-score', 'foot_faultsZ-score',
                                 'averageScore', '2 Cluster', '3 Cluster', '4 Cluster', '5 Cluster', '6 Cluster']], 
                     on=['subjectID', 'merged_timepoint'], how='left')


# Define the output file path
output_file_path = os.path.join(parent_dir, 'output', 'Final_Quantitative_output','Quantitative_results_from_dwi_processing_merged_with_behavior_data.csv')

# Save the merged DataFrame as a CSV file
merged_df.to_csv(output_file_path, index=False)