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2024_Ruthe_SND
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2024_Ruthe_SND
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lucaruthe 61a852543a I added all my images from the thesis as PDFs 1 day ago
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4Presentation 565a9fd388 I added a folder with data from ImageJ 3 months ago
Bilder_Luca_BA 61a852543a I added all my images from the thesis as PDFs 1 day ago
Correlation_with_behavior e702eb74fb adjusted code and ran it again 1 week ago
Final_Quantitative_output 78815df6e9 new posthoc statistics with dunnett instead of tukey 4 days ago
Final_Quantitative_output_with_figures 136bb6c901 [DATALAD] Recorded changes 1 week ago
ImageJ 61a852543a I added all my images from the thesis as PDFs 1 day ago
MaskComparisons 9bcdec0ea4 added overlap percentage csv 1 month ago
Tract_Density_Map 3a7f02f1c4 temp 2 months ago
Tract_Density_Map_registered 0332ba78b3 imagJ 2 months ago
Tract_Mask_NIFTI c5875af414 added white matter mask 2 weeks ago
Tract_Mask_registered dfaee6412d applied mask2mtpl to whitematter mask 2 weeks ago
Tract_Mask_tt 8634e48d2c [DATALAD] Recorded changes 3 weeks ago
Viral_tracing_flipped 2e82796756 added viraltracin 2 mtpl space filp function 2 months ago
behavior_analysis 83bbe1278b merged behavior data with quantitaitve dti values and corrolated between them with corrections 1 month ago
del 2e7526154b I updated all tract masks and added the extrapyramidal tract masks as well as some variations of the CST and thalamocortical tracking. 2 months ago
figures b1629b4c36 deleted some files 3 months ago
C57BL6_mouse.iso_registerd.nii.gz 45782701c4 updated input and output 3 months ago
Overlap_metrics_of_VT_and_dwi_masks.csv 9bcdec0ea4 added overlap percentage csv 1 month ago
README.md a0f2377f45 I updated the READme file for Outputs 3 months ago
affineTrafo.txt 45782701c4 updated input and output 3 months ago

README.md

Outputs

  • Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
  • Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
  • affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • Nifti_Trakte_V2: These are the updated tracts (NV).
  • Tract_Density: This folder contains the density of each generated tract mask, saved from DSI-Studio.