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arefks 132437cf05 final results 6 bulan lalu
..
.ipynb_checkpoints e8e54e0207 current state: code is finished for representation 9 bulan lalu
AIDAmri @ 8e7f9d3597 13cb663094 added all of the code necessery 9 bulan lalu
mouse_connectivity e8e54e0207 current state: code is finished for representation 9 bulan lalu
Big_data_mouse_practical_2020_answer.ipynb e8e54e0207 current state: code is finished for representation 9 bulan lalu
GetQuantitativeValues.py a6c636f3fb intermideiat step 7 bulan lalu
README.md 13cb663094 added all of the code necessery 9 bulan lalu
correlation_between_bahavior_and_DTI.py 132437cf05 final results 6 bulan lalu
correlation_between_bahavior_and_DTI_anovaSpecific.py 132437cf05 final results 6 bulan lalu
heat_maps_correlation.py 164f8d841f intermidiate step 7 bulan lalu
incooparate_behavior_data.py 132437cf05 final results 6 bulan lalu
mask2MTPL.py 13cb663094 added all of the code necessery 9 bulan lalu
overlayPlot.py 86fce3a119 current state: code is finished for representation 9 bulan lalu
plotting_quantitative_dti_values.py 132437cf05 final results 6 bulan lalu
proof_of_modalities.py 9bcdec0ea4 added overlap percentage csv 7 bulan lalu
register_masks.py 131d565302 temp stage 6 bulan lalu
remapping_voiting_qc.py 18752865ca changed voitign with script to have additional columns 6 bulan lalu
statsmodel_training.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations 7 bulan lalu
transpose_csv.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations 7 bulan lalu
viralTracing2MTPL.py 2e82796756 added viraltracin 2 mtpl space filp function 8 bulan lalu

README.md

AIDAmri code

This is the code used to process raw Bruker data and to apply transformations from the drawn masks to each individual subject. Note that this is a subdataset linked to the GitHub page of AIDAmri.

The link to the exact branch of the code which was used for this process is: AIDAmri - SND_Mask_trafu branch.

Example usage of code

root@9c22c56092e5:/aida/DATA/code# python mask2MTPL.py -i /aida/DATA/output/Tract_Density -o /aida/DATA/output/Nifti_Tract_density_registered