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2024_Ruthe_SND
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2024_Ruthe_SND
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output
arefks 164f8d841f intermidiate step 7 months ago
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4Presentation 565a9fd388 I added a folder with data from ImageJ 9 months ago
Correlation_with_behavior 164f8d841f intermidiate step 7 months ago
Final_Quantitative_output 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations 7 months ago
ImageJ ded8d8732e I added all overlay pictures from ImageJ 7 months ago
MaskComparisons 9bcdec0ea4 added overlap percentage csv 7 months ago
Tract_Density_Map 3a7f02f1c4 temp 8 months ago
Tract_Density_Map_registered 0332ba78b3 imagJ 8 months ago
Tract_Mask_NIFTI e011377213 I added all fiber tracts as tt.gz file 7 months ago
Tract_Mask_registered 0332ba78b3 imagJ 8 months ago
Tract_Mask_tt e011377213 I added all fiber tracts as tt.gz file 7 months ago
Viral_tracing_flipped 2e82796756 added viraltracin 2 mtpl space filp function 8 months ago
behavior_analysis 83bbe1278b merged behavior data with quantitaitve dti values and corrolated between them with corrections 7 months ago
del 2e7526154b I updated all tract masks and added the extrapyramidal tract masks as well as some variations of the CST and thalamocortical tracking. 8 months ago
figures b1629b4c36 deleted some files 9 months ago
C57BL6_mouse.iso_registerd.nii.gz 45782701c4 updated input and output 9 months ago
Overlap_metrics_of_VT_and_dwi_masks.csv 9bcdec0ea4 added overlap percentage csv 7 months ago
README.md a0f2377f45 I updated the READme file for Outputs 9 months ago
affineTrafo.txt 45782701c4 updated input and output 9 months ago

README.md

Outputs

  • Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
  • Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
  • affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • Nifti_Trakte_V2: These are the updated tracts (NV).
  • Tract_Density: This folder contains the density of each generated tract mask, saved from DSI-Studio.