add DLC projects back

03_DLCProjects/.gitignore

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+*.ipynb_checkpoints/

03_DLCProjects/01_projects/MLA-041630-tips-Keisuke-2020-09-09/config.yaml

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+# Project definitions (do not edit)
+Task: MLA-041630-tips
+scorer: Keisuke
+date: Sep9
+
+# Project path (change when moving around)
+project_path: /home/mouse/ks/Projects/whiskers-realtime/dlc_projects/MLA-041630-tips-Keisuke-2020-09-09
+
+# Annotation data set configuration (and individual video cropping parameters)
+video_sets:
+  /home/mouse/ks/Projects/whiskers-realtime/videos/animal-train_2020-09-05/MLA-041630_2020-09-05_run121942.npz:
+    crop: 0, 640, 0, 480
+bodyparts:
+- Tip1
+- Tip2
+- Tip3
+start: 0
+stop: 1
+numframes2pick: 30
+
+# Plotting configuration
+skeleton:
+- - Tip1
+  - Tip2
+- - Tip2
+  - Tip3
+skeleton_color: white
+pcutoff: 0
+dotsize: 4
+alphavalue: 0.7
+colormap: gist_rainbow
+
+# Training,Evaluation and Analysis configuration
+TrainingFraction:
+- 0.95
+iteration: 1
+resnet:
+snapshotindex: -1
+batch_size: 1
+
+# Cropping Parameters (for analysis and outlier frame detection)
+cropping: false
+#if cropping is true for analysis, then set the values here:
+x1: 0
+x2: 640
+y1: 277
+y2: 624
+
+# Refinement configuration (parameters from annotation dataset configuration also relevant in this stage)
+corner2move2:
+- 50
+- 50
+move2corner: true
+default_net_type: resnet_50
+default_augmenter: default

03_DLCProjects/01_projects/MLA-041630-tips-Keisuke-2020-09-09/dlc-models/iteration-0/MLA-041630-tipsSep9-trainset95shuffle1/test/pose_cfg.yaml

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+all_joints:
+- - 0
+- - 1
+- - 2
+all_joints_names:
+- Tip1
+- Tip2
+- Tip3
+dataset: training-datasets/iteration-0/UnaugmentedDataSet_MLA-041630-tipsSep9/MLA-041630-tips_Keisuke95shuffle1.mat
+global_scale: 0.8
+init_weights: /home/mouse/anaconda3/envs/dlc2.1/lib/python3.7/site-packages/deeplabcut/pose_estimation_tensorflow/models/pretrained/resnet_v1_50.ckpt
+location_refinement: true
+locref_stdev: 7.2801
+net_type: resnet_50
+num_joints: 3
+scoremap_dir: test

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+all_model_checkpoint_paths: "/home/mouse/ks/Projects/whiskers-realtime/dlc_projects/MLA-041630-tips-Keisuke-2020-09-09/dlc-models/iteration-0/MLA-041630-tipsSep9-trainset95shuffle1/train/snapshot-850000"
+all_model_checkpoint_paths: "/home/mouse/ks/Projects/whiskers-realtime/dlc_projects/MLA-041630-tips-Keisuke-2020-09-09/dlc-models/iteration-0/MLA-041630-tipsSep9-trainset95shuffle1/train/snapshot-900000"
+all_model_checkpoint_paths: "/home/mouse/ks/Projects/whiskers-realtime/dlc_projects/MLA-041630-tips-Keisuke-2020-09-09/dlc-models/iteration-0/MLA-041630-tipsSep9-trainset95shuffle1/train/snapshot-950000"
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+all_joints:
+- - 0
+- - 1
+- - 2
+all_joints_names:
+- Tip1
+- Tip2
+- Tip3
+batch_size: 1
+bottomheight: 400
+crop: true
+cropratio: 0.4
+dataset: training-datasets/iteration-0/UnaugmentedDataSet_MLA-041630-tipsSep9/MLA-041630-tips_Keisuke95shuffle1.mat
+dataset_type: default
+display_iters: 1000
+global_scale: 0.8
+init_weights: /home/mouse/anaconda3/envs/dlc2.1/lib/python3.7/site-packages/deeplabcut/pose_estimation_tensorflow/models/pretrained/resnet_v1_50.ckpt
+intermediate_supervision: false
+intermediate_supervision_layer: 12
+leftwidth: 400
+location_refinement: true
+locref_huber_loss: true
+locref_loss_weight: 0.05
+locref_stdev: 7.2801
+max_input_size: 1500
+metadataset: training-datasets/iteration-0/UnaugmentedDataSet_MLA-041630-tipsSep9/Documentation_data-MLA-041630-tips_95shuffle1.pickle
+min_input_size: 64
+minsize: 100
+mirror: false
+multi_step:
+- - 0.005
+  - 10000
+- - 0.02
+  - 430000
+- - 0.002
+  - 730000
+- - 0.001
+  - 1030000
+net_type: resnet_50
+num_joints: 3
+pos_dist_thresh: 17
+project_path: /home/mouse/ks/Projects/whiskers-realtime/dlc_projects/MLA-041630-tips-Keisuke-2020-09-09
+rightwidth: 400
+save_iters: 50000
+scale_jitter_lo: 0.5
+scale_jitter_up: 1.25
+topheight: 400

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+all_joints:
+- - 0
+- - 1
+- - 2
+all_joints_names:
+- Tip1
+- Tip2
+- Tip3
+dataset: training-datasets/iteration-1/UnaugmentedDataSet_MLA-041630-tipsSep9/MLA-041630-tips_Keisuke95shuffle1.mat
+global_scale: 0.8
+init_weights: /home/mouse/anaconda3/envs/dlc2.1/lib/python3.7/site-packages/deeplabcut/pose_estimation_tensorflow/models/pretrained/resnet_v1_50.ckpt
+location_refinement: true
+locref_stdev: 7.2801
+net_type: resnet_50
+num_joints: 3
+scoremap_dir: test

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+- - 1
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+- Tip2
+- Tip3
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+dataset_type: default
+display_iters: 1000
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+minsize: 100
+mirror: false
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+  - 10000
+- - 0.02
+  - 430000
+- - 0.002
+  - 730000
+- - 0.001
+  - 1030000
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+project_path: /home/mouse/ks/Projects/whiskers-realtime/dlc_projects/MLA-041630-tips-Keisuke-2020-09-09
+rightwidth: 400
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