arefks
90c52b4a40
changed getquantitvevalues scode so that white matter tracts are added to the mix
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6 месяцев назад | |
|---|---|---|
| .. | ||
| .ipynb_checkpoints | 9 месяцев назад | |
| AIDAmri @ 8e7f9d3597 | 9 месяцев назад | |
| mouse_connectivity | 9 месяцев назад | |
| Big_data_mouse_practical_2020_answer.ipynb | 9 месяцев назад | |
| GetQuantitativeValues.py | 6 месяцев назад | |
| README.md | 9 месяцев назад | |
| correlation_between_bahavior_and_DTI.py | 6 месяцев назад | |
| correlation_between_bahavior_and_DTI_anovaSpecific.py | 6 месяцев назад | |
| heat_maps_correlation.py | 6 месяцев назад | |
| incooparate_behavior_data.py | 6 месяцев назад | |
| mask2MTPL.py | 6 месяцев назад | |
| overlayPlot.py | 9 месяцев назад | |
| plotting_quantitative_dti_values.py | 6 месяцев назад | |
| proof_of_modalities.py | 7 месяцев назад | |
| register_masks.py | 6 месяцев назад | |
| remapping_voiting_qc.py | 6 месяцев назад | |
| statsmodel_training.py | 7 месяцев назад | |
| threshold_whitematter.py | 6 месяцев назад | |
| transpose_csv.py | 7 месяцев назад | |
| viralTracing2MTPL.py | 8 месяцев назад | |
README.md
AIDAmri code
This is the code used to process raw Bruker data and to apply transformations from the drawn masks to each individual subject. Note that this is a subdataset linked to the GitHub page of AIDAmri.
The link to the exact branch of the code which was used for this process is: AIDAmri - SND_Mask_trafu branch.
Example usage of code
root@9c22c56092e5:/aida/DATA/code# python mask2MTPL.py -i /aida/DATA/output/Tract_Density -o /aida/DATA/output/Nifti_Tract_density_registered