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arefks 150a909027 finished first stage poster 2 týždňov pred
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4Presentation 150a909027 finished first stage poster 2 týždňov pred
Bilder_Luca_BA 61a852543a I added all my images from the thesis as PDFs 4 mesiacov pred
Correlation_with_behavior e702eb74fb adjusted code and ran it again 4 mesiacov pred
Final_Quantitative_output e61376a090 Merge remote-tracking branch 'origin/master' 3 týždňov pred
Final_Quantitative_output_for_atalas_regions c4c3bd5b9b stuff for poster, atlas fa valus 3 týždňov pred
Final_Quantitative_output_with_figures 136bb6c901 [DATALAD] Recorded changes 4 mesiacov pred
ImageJ e61376a090 Merge remote-tracking branch 'origin/master' 3 týždňov pred
MaskComparisons 9bcdec0ea4 added overlap percentage csv 5 mesiacov pred
Tract_Density_Map 3a7f02f1c4 temp 6 mesiacov pred
Tract_Density_Map_registered 0013120323 hmmm 3 týždňov pred
Tract_Mask_NIFTI c5875af414 added white matter mask 4 mesiacov pred
Tract_Mask_registered dfaee6412d applied mask2mtpl to whitematter mask 4 mesiacov pred
Tract_Mask_tt 8634e48d2c [DATALAD] Recorded changes 5 mesiacov pred
Viral_tracing_flipped 2e82796756 added viraltracin 2 mtpl space filp function 6 mesiacov pred
behavior_analysis 83bbe1278b merged behavior data with quantitaitve dti values and corrolated between them with corrections 5 mesiacov pred
del 0013120323 hmmm 3 týždňov pred
figures b1629b4c36 deleted some files 7 mesiacov pred
C57BL6_mouse.iso_registerd.nii.gz 45782701c4 updated input and output 8 mesiacov pred
Overlap_metrics_of_VT_and_dwi_masks.csv 9bcdec0ea4 added overlap percentage csv 5 mesiacov pred
README.md a0f2377f45 I updated the READme file for Outputs 7 mesiacov pred
affineTrafo.txt 45782701c4 updated input and output 8 mesiacov pred

README.md

Outputs

  • Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
  • Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
  • affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • Nifti_Trakte_V2: These are the updated tracts (NV).
  • Tract_Density: This folder contains the density of each generated tract mask, saved from DSI-Studio.