cortical-surfaces-freesurfer/sub-04/mri/transforms/T2raw.dat.sum

$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake5
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/bbr.pass1.dat
subject sub004
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376849299
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.996  -0.033  -0.078   0.022;
 0.080   0.081   0.994  -0.000;
-0.026  -0.996   0.083   0.179;
 0.000   0.000   0.000   1.000;

Initial costs ----------------
Number of surface hits 254571
WM  Intensity0    61.9760 +/-   9.7096
Ctx Intensity0    78.5671 +/-   9.7566
Pct Contrast0     23.8049 +/-  14.7579
Cost   0.0954
RelCost   0.0944

Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.0866   0.0866  0.0
     1  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000   0.0000      0.0865   0.0865  0.0
     3  -0.1000  -0.1000  -0.1000  -0.1000   0.0000  -0.1000      0.0829   0.0829  0.0
     4  -0.1000  -0.1000  -0.1000  -0.1000   0.0000   0.0000      0.0824   0.0824  0.0
     6  -0.1000  -0.1000  -0.1000  -0.1000   0.1000  -0.1000      0.0822   0.0822  0.0
     7  -0.1000  -0.1000  -0.1000  -0.1000   0.1000   0.0000      0.0815   0.0815  0.0
    13  -0.1000  -0.1000  -0.1000   0.0000   0.0000   0.0000      0.0793   0.0793  0.0
    31  -0.1000  -0.1000   0.0000  -0.1000   0.0000   0.0000      0.0791   0.0791  0.0
    40  -0.1000  -0.1000   0.0000   0.0000   0.0000   0.0000      0.0785   0.0785  0.0
    93  -0.1000   0.0000  -0.1000   0.0000   0.0000  -0.1000      0.0765   0.0765  0.0
    94  -0.1000   0.0000  -0.1000   0.0000   0.0000   0.0000      0.0762   0.0762  0.0
   120  -0.1000   0.0000   0.0000   0.0000   0.0000  -0.1000      0.0757   0.0757  0.0
   121  -0.1000   0.0000   0.0000   0.0000   0.0000   0.0000      0.0755   0.0755  0.0
   337   0.0000   0.0000  -0.1000   0.0000   0.0000   0.0000      0.0747   0.0747  0.0
   346   0.0000   0.0000  -0.1000   0.1000   0.0000   0.0000      0.0744   0.0744  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.0727   0.0727  0.0

Final costs ----------------
Number of surface hits 254571
WM  Intensity0    61.9785 +/-   9.7235
Ctx Intensity0    78.5620 +/-   9.7033
Pct Contrast0     23.8028 +/-  14.6897
Cost   0.0904
RelCost   0.0944
Number of iterations     7
Min cost was 0.090403
RelMinCost   0.0896
Number of FunctionCalls   525
OptimizationTime 63.518000 sec
Parameters at optimum (transmm, rotdeg)
 0.13977 -0.03823 -0.14024 -0.00674 -0.07340 -0.04490 
Number of surface hits 254571
WM  Intensity    61.9785 +/-   9.7235
Ctx Intensity    78.5620 +/-   9.7033
Pct Contrast     23.8028 +/-  14.6897
Cost at optimum   0.0904
RelCostOptimum   0.0896
nhits= 254571 wmmn=   61.9785 wmstd=  9.7235 constd=   14.6897 ctxmn=   78.5620 ctxstd=  9.7033 conmn =  23.8028 costmn =   0.0904 
#C#   0.140  -0.038  -0.140 -0.007 -0.073 -0.045 0.000000 0.000000 0.090403 61.978476 78.561974 23.802769 0.000000 0.500000     1 0
Reg at min cost was 
 0.997  -0.031  -0.077   0.162;
 0.079   0.080   0.994  -0.039;
-0.025  -0.996   0.083   0.039;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
-0.000  -0.001  -0.001  -0.140;
 0.001   0.000  -0.000   0.038;
-0.001   0.000   0.000   0.140;
 0.000   0.000   0.000   0.000;

Surface RMS Diff (mm) 0.221031 0.321591