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- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake5
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/bbr.pass1.dat
- subject sub004
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376849299
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.996 -0.033 -0.078 0.022;
- 0.080 0.081 0.994 -0.000;
- -0.026 -0.996 0.083 0.179;
- 0.000 0.000 0.000 1.000;
- Initial costs ----------------
- Number of surface hits 254571
- WM Intensity0 61.9760 +/- 9.7096
- Ctx Intensity0 78.5671 +/- 9.7566
- Pct Contrast0 23.8049 +/- 14.7579
- Cost 0.0954
- RelCost 0.0944
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0866 0.0866 0.0
- 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0865 0.0865 0.0
- 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.0829 0.0829 0.0
- 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0824 0.0824 0.0
- 6 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.0822 0.0822 0.0
- 7 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.0815 0.0815 0.0
- 13 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0793 0.0793 0.0
- 31 -0.1000 -0.1000 0.0000 -0.1000 0.0000 0.0000 0.0791 0.0791 0.0
- 40 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0785 0.0785 0.0
- 93 -0.1000 0.0000 -0.1000 0.0000 0.0000 -0.1000 0.0765 0.0765 0.0
- 94 -0.1000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.0762 0.0762 0.0
- 120 -0.1000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.0757 0.0757 0.0
- 121 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0755 0.0755 0.0
- 337 0.0000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.0747 0.0747 0.0
- 346 0.0000 0.0000 -0.1000 0.1000 0.0000 0.0000 0.0744 0.0744 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0727 0.0727 0.0
- Final costs ----------------
- Number of surface hits 254571
- WM Intensity0 61.9785 +/- 9.7235
- Ctx Intensity0 78.5620 +/- 9.7033
- Pct Contrast0 23.8028 +/- 14.6897
- Cost 0.0904
- RelCost 0.0944
- Number of iterations 7
- Min cost was 0.090403
- RelMinCost 0.0896
- Number of FunctionCalls 525
- OptimizationTime 63.518000 sec
- Parameters at optimum (transmm, rotdeg)
- 0.13977 -0.03823 -0.14024 -0.00674 -0.07340 -0.04490
- Number of surface hits 254571
- WM Intensity 61.9785 +/- 9.7235
- Ctx Intensity 78.5620 +/- 9.7033
- Pct Contrast 23.8028 +/- 14.6897
- Cost at optimum 0.0904
- RelCostOptimum 0.0896
- nhits= 254571 wmmn= 61.9785 wmstd= 9.7235 constd= 14.6897 ctxmn= 78.5620 ctxstd= 9.7033 conmn = 23.8028 costmn = 0.0904
- #C# 0.140 -0.038 -0.140 -0.007 -0.073 -0.045 0.000000 0.000000 0.090403 61.978476 78.561974 23.802769 0.000000 0.500000 1 0
- Reg at min cost was
- 0.997 -0.031 -0.077 0.162;
- 0.079 0.080 0.994 -0.039;
- -0.025 -0.996 0.083 0.039;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- -0.000 -0.001 -0.001 -0.140;
- 0.001 0.000 -0.000 0.038;
- -0.001 0.000 0.000 0.140;
- 0.000 0.000 0.000 0.000;
- Surface RMS Diff (mm) 0.221031 0.321591
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