$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/scripts mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname snake5 machine x86_64 user fkaule movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/template.nii regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/tmp.bbregister.7756/bbr.pass1.dat subject sub004 dof 6 outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub004/mri/transforms/T2raw.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1376849299 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.996 -0.033 -0.078 0.022; 0.080 0.081 0.994 -0.000; -0.026 -0.996 0.083 0.179; 0.000 0.000 0.000 1.000; Initial costs ---------------- Number of surface hits 254571 WM Intensity0 61.9760 +/- 9.7096 Ctx Intensity0 78.5671 +/- 9.7566 Pct Contrast0 23.8049 +/- 14.7579 Cost 0.0954 RelCost 0.0944 Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0866 0.0866 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0865 0.0865 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.0829 0.0829 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0824 0.0824 0.0 6 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.0822 0.0822 0.0 7 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.0815 0.0815 0.0 13 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0793 0.0793 0.0 31 -0.1000 -0.1000 0.0000 -0.1000 0.0000 0.0000 0.0791 0.0791 0.0 40 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0785 0.0785 0.0 93 -0.1000 0.0000 -0.1000 0.0000 0.0000 -0.1000 0.0765 0.0765 0.0 94 -0.1000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.0762 0.0762 0.0 120 -0.1000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.0757 0.0757 0.0 121 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0755 0.0755 0.0 337 0.0000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.0747 0.0747 0.0 346 0.0000 0.0000 -0.1000 0.1000 0.0000 0.0000 0.0744 0.0744 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0727 0.0727 0.0 Final costs ---------------- Number of surface hits 254571 WM Intensity0 61.9785 +/- 9.7235 Ctx Intensity0 78.5620 +/- 9.7033 Pct Contrast0 23.8028 +/- 14.6897 Cost 0.0904 RelCost 0.0944 Number of iterations 7 Min cost was 0.090403 RelMinCost 0.0896 Number of FunctionCalls 525 OptimizationTime 63.518000 sec Parameters at optimum (transmm, rotdeg) 0.13977 -0.03823 -0.14024 -0.00674 -0.07340 -0.04490 Number of surface hits 254571 WM Intensity 61.9785 +/- 9.7235 Ctx Intensity 78.5620 +/- 9.7033 Pct Contrast 23.8028 +/- 14.6897 Cost at optimum 0.0904 RelCostOptimum 0.0896 nhits= 254571 wmmn= 61.9785 wmstd= 9.7235 constd= 14.6897 ctxmn= 78.5620 ctxstd= 9.7033 conmn = 23.8028 costmn = 0.0904 #C# 0.140 -0.038 -0.140 -0.007 -0.073 -0.045 0.000000 0.000000 0.090403 61.978476 78.561974 23.802769 0.000000 0.500000 1 0 Reg at min cost was 0.997 -0.031 -0.077 0.162; 0.079 0.080 0.994 -0.039; -0.025 -0.996 0.083 0.039; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 -0.001 -0.001 -0.140; 0.001 0.000 -0.000 0.038; -0.001 0.000 0.000 0.140; 0.000 0.000 0.000 0.000; Surface RMS Diff (mm) 0.221031 0.321591