cortical-surfaces-freesurfer/sub-20/mri/transforms/T2raw.dat.log

Logfile for bbregister
Thu Aug  8 22:15:45 CEST 2013

setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
/opt/freesurfer/5.3.0/bin/bbregister --s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.lta --init-fsl --T2

$Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $
Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
FREESURFER_HOME /opt/freesurfer/5.3.0
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.998287, -0.0504193, 0.0296894)
j_ras = (-0.0475266, 0.9947, 0.0911741)
k_ras = (0.034129, -0.0896069, 0.995392)
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii...
fslregister --s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister --dof 6 --fsvol brainmask.mgz

Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fslregister.log

Thu Aug  8 22:15:50 CEST 2013
--s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister --dof 6 --fsvol brainmask.mgz
$Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $
snake6
Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
nIters 1
--------------------------------------
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/brainmask.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 6.98492e-09, -3.72529e-09)
j_ras = (3.72529e-09, 0, -1)
k_ras = (-1.00117e-08, 1, 7.45058e-09)
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii...
--------------------------------------
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii --frame 0
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii --frame 0 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.998287, -0.0504193, 0.0296894)
j_ras = (-0.0475266, 0.9947, 0.0911741)
k_ras = (0.034129, -0.0896069, 0.995392)
keeping frame 0
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii...
Mov determinant is -0.311079
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/reg0.19121.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat0 --s sub020 --noedit
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/reg0.19121.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii
Tmov: --------------------
-0.700   0.000   0.000   95.890;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 1, float2int = 0
Computing reg from header (and possibly input matrix)
---- Input registration matrix (computed) --------
 0.998   0.050  -0.030  -0.000;
 0.034  -0.090   0.995   0.000;
 0.048  -0.995  -0.091   0.000;
 0.000   0.000   0.000   1.000;
---------------------------------------
---- Input registration matrix --------
 0.998   0.050  -0.030  -0.000;
 0.034  -0.090   0.995   0.000;
 0.048  -0.995  -0.091   0.000;
 0.000   0.000   0.000   1.000;
Determinant 1
subject = sub020
RegMat ---------------------------
 0.998   0.050  -0.030  -0.000;
 0.034  -0.090   0.995   0.000;
 0.048  -0.995  -0.091   0.000;
 0.000   0.000   0.000   1.000;
FSLOUTPUTTYPE NIFTI 
tkreg2FSL: mov det = -0.311079, ref det = -1
Thu Aug  8 22:15:58 CEST 2013
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat0
Thu Aug  8 22:20:31 CEST 2013
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch
tkregister2_cmdl --s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat --noedit
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
---- FSL registration matrix --------
 0.998   0.048  -0.033   30.393;
-0.029  -0.091  -0.995   271.146;
-0.050   0.995  -0.090   16.219;
 0.000   0.000   0.000   1.000;
---------------------------------------
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
Tmov: --------------------
-0.700   0.000   0.000   95.890;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 0, float2int = 0
FSLOUTPUTTYPE NIFTI 
fsl2TkReg: mov det = -0.311079, ref det = -1
---- Input registration matrix (computed) --------
 0.998   0.050  -0.029  -0.026;
 0.033  -0.090   0.995   1.239;
 0.048  -0.995  -0.091  -0.881;
 0.000   0.000   0.000   1.000;
---------------------------------------
---- Input registration matrix --------
 0.998   0.050  -0.029  -0.026;
 0.033  -0.090   0.995   1.239;
 0.048  -0.995  -0.091  -0.881;
 0.000   0.000   0.000   1.000;
Determinant 1
subject = sub020
RegMat ---------------------------
 0.998   0.050  -0.029  -0.026;
 0.033  -0.090   0.995   1.239;
 0.048  -0.995  -0.091  -0.881;
 0.000   0.000   0.000   1.000;
 
Started at Thu Aug 8 22:15:50 CEST 2013 
Ended   at Thu Aug  8 22:26:43 CEST 2013
 
fslregister Done
 
To check results, run:
tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --surf orig
 
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 
sysname  Linux
hostname snake6
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat
subject sub020
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 100
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000100
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376959936
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.998   0.050  -0.029  -0.026;
 0.033  -0.090   0.995   1.239;
 0.048  -0.995  -0.091  -0.881;
 0.000   0.000   0.000   1.000;

Loading mov
Projecting LH Surfs
Loading lh.white surf
Loading lh.thickness for GM
GM Proj: 1 0.500000 2.000000
WM Proj: 0 0.500000 2.000000
Projecting RH Surfs
Loading rh.white surf
Loading rh.thickness
Projecting RH Surfs
Computing relative cost
 0  -25.0 -25.0 -25.0   1.009564
 1  -25.0 -25.0  25.0   0.989784
 2  -25.0  25.0 -25.0   0.998370
 3  -25.0  25.0  25.0   1.044732
 4   25.0 -25.0 -25.0   1.015749
 5   25.0 -25.0  25.0   1.018151
 6   25.0  25.0 -25.0   1.020733
 7   25.0  25.0  25.0   1.002708
REL:  8  0.289753    8.099791  1.012474 rel = 0.286183 
Initial costs ----------------
Number of surface hits 2561
WM  Intensity    52.3774 +/-   7.4491
Ctx Intensity    63.9203 +/-  10.2015
Pct Contrast     19.3608 +/-  18.6507
Cost   0.2898
RelCost   0.2862

------------------------------------
Brute force preopt -4 4 4, n = 729
     0  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000      0.9893   0.9893  0.0
     1  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000   0.0000      0.9767   0.9767  0.0
     6  -4.0000  -4.0000  -4.0000  -4.0000   4.0000  -4.0000      0.9609   0.9609  0.0
    15  -4.0000  -4.0000  -4.0000   0.0000   4.0000  -4.0000      0.8787   0.8787  0.0
    21  -4.0000  -4.0000  -4.0000   4.0000   0.0000  -4.0000      0.8564   0.8564  0.0
    39  -4.0000  -4.0000   0.0000   0.0000   0.0000  -4.0000      0.8233   0.8233  0.0
   102  -4.0000   0.0000  -4.0000   4.0000   0.0000  -4.0000      0.7725   0.7725  0.0
   120  -4.0000   0.0000   0.0000   0.0000   0.0000  -4.0000      0.6807   0.6807  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.2898   0.2898  0.0
Brute Force --------------------------
Min cost was 0.289753
Number of iterations   729
Search time 3.750000 sec
Parameters at best (transmm, rotdeg)
  0.000   0.000   0.000  0.000  0.000  0.000 
--------------------------------------------

Starting Powell Minimization
Init Powel Params dof = 6
0 0
1 0
2 0
3 0
4 0
5 0
   9 -0.090  0.000  0.000  0.000  0.000  0.000   0.2897133289
  10 -0.047  0.000  0.000  0.000  0.000  0.000   0.2896632757
  11 -0.052  0.000  0.000  0.000  0.000  0.000   0.2896421440
  12 -0.065  0.000  0.000  0.000  0.000  0.000   0.2895030126
  13 -0.075  0.000  0.000  0.000  0.000  0.000   0.2894471780
  19 -0.075 -1.618  0.000  0.000  0.000  0.000   0.2674030719
  20 -0.075 -0.895  0.000  0.000  0.000  0.000   0.2215231083
  25 -0.075 -0.765  0.000  0.000  0.000  0.000   0.2195910650
  26 -0.075 -0.782  0.000  0.000  0.000  0.000   0.2188661467
  28 -0.075 -0.795  0.000  0.000  0.000  0.000   0.2186373520
  33 -0.075 -0.795  1.000  0.000  0.000  0.000   0.1197352454
  39 -0.075 -0.795  0.984  0.000  0.000  0.000   0.1197116263
  42 -0.075 -0.795  0.985  0.000  0.000  0.000   0.1197115578
  49 -0.075 -0.795  0.985  0.006  0.000  0.000   0.1194757737
  50 -0.075 -0.795  0.985  0.073  0.000  0.000   0.1185802749
  52 -0.075 -0.795  0.985  0.056  0.000  0.000   0.1183779642
  54 -0.075 -0.795  0.985  0.057  0.000  0.000   0.1183773232
  64 -0.075 -0.795  0.985  0.057  0.025  0.000   0.1182287058
  65 -0.075 -0.795  0.985  0.057  0.021  0.000   0.1182084040
  66 -0.075 -0.795  0.985  0.057  0.018  0.000   0.1182066430
  68 -0.075 -0.795  0.985  0.057  0.019  0.000   0.1182064247
  75 -0.075 -0.795  0.985  0.057  0.019  0.042   0.1162862375
  76 -0.075 -0.795  0.985  0.057  0.019  0.140   0.1159126150
  78 -0.075 -0.795  0.985  0.057  0.019  0.124   0.1157646068
  79 -0.075 -0.795  0.985  0.057  0.019  0.103   0.1155614615
  81 -0.075 -0.795  0.985  0.057  0.019  0.095   0.1155392746
  83 -0.075 -0.795  0.985  0.057  0.019  0.096   0.1155390716
  85 -0.075 -0.795  0.985  0.057  0.019  0.097   0.1155390022
  95 -0.055 -0.795  0.985  0.057  0.019  0.097   0.1152808532
  97 -0.053 -0.795  0.985  0.057  0.019  0.097   0.1152789001
 105 -0.053 -0.814  0.985  0.057  0.019  0.097   0.1144369243
 108 -0.053 -0.834  0.985  0.057  0.019  0.097   0.1141406839
 110 -0.053 -0.833  0.985  0.057  0.019  0.097   0.1141394298
 119 -0.053 -0.833  0.970  0.057  0.019  0.097   0.1140526486
 121 -0.053 -0.833  0.971  0.057  0.019  0.097   0.1140517714
 140 -0.053 -0.833  0.971  0.057  0.034  0.097   0.1138511865
 141 -0.053 -0.833  0.971  0.057  0.037  0.097   0.1138506507
 142 -0.053 -0.833  0.971  0.057  0.038  0.097   0.1138499119
 144 -0.053 -0.833  0.971  0.057  0.041  0.097   0.1138485458
 146 -0.053 -0.833  0.971  0.057  0.040  0.097   0.1138483746
 155 -0.053 -0.833  0.971  0.057  0.040  0.123   0.1135440152
 156 -0.053 -0.833  0.971  0.057  0.040  0.124   0.1135424953
 157 -0.053 -0.833  0.971  0.057  0.040  0.126   0.1135406260
 160 -0.053 -0.833  0.971  0.057  0.040  0.127   0.1135396864
 171 -0.054 -0.833  0.971  0.057  0.040  0.127   0.1135367739
 172 -0.056 -0.833  0.971  0.057  0.040  0.127   0.1135355177
 183 -0.056 -0.831  0.971  0.057  0.040  0.127   0.1135331747
 194 -0.056 -0.831  0.980  0.057  0.040  0.127   0.1135007806
 196 -0.056 -0.831  0.979  0.057  0.040  0.127   0.1134999047
 207 -0.056 -0.831  0.979  0.059  0.040  0.127   0.1134947058
 216 -0.056 -0.831  0.979  0.059  0.045  0.127   0.1134266010
 217 -0.056 -0.831  0.979  0.059  0.049  0.127   0.1134182977
 229 -0.056 -0.831  0.979  0.059  0.049  0.133   0.1134129142
 231 -0.056 -0.831  0.979  0.059  0.049  0.131   0.1134106662
 239 -0.057 -0.830  0.982  0.060  0.052  0.132   0.1133981122
 240 -0.057 -0.830  0.982  0.060  0.053  0.132   0.1133975152
 242 -0.057 -0.830  0.982  0.060  0.053  0.132   0.1133972942
 255 -0.063 -0.830  0.982  0.060  0.053  0.132   0.1133716336
 275 -0.063 -0.830  0.978  0.060  0.053  0.132   0.1133716322
 276 -0.063 -0.830  0.977  0.060  0.053  0.132   0.1133696908
 277 -0.063 -0.830  0.976  0.060  0.053  0.132   0.1133684141
 287 -0.063 -0.830  0.976  0.064  0.053  0.132   0.1133547938
 292 -0.063 -0.830  0.976  0.065  0.053  0.132   0.1133540618
 303 -0.063 -0.830  0.976  0.065  0.053  0.128   0.1133421952
 304 -0.063 -0.830  0.976  0.065  0.053  0.127   0.1133421643
 311 -0.064 -0.829  0.979  0.066  0.056  0.128   0.1133410216
 312 -0.063 -0.829  0.977  0.066  0.055  0.128   0.1133394997
 314 -0.063 -0.829  0.977  0.066  0.054  0.127   0.1133391143
 320 -0.063 -0.829  0.977  0.066  0.054  0.127   0.1133390818
 322 -0.063 -0.829  0.977  0.066  0.054  0.127   0.1133389740
 323 -0.071 -0.828  0.975  0.072  0.059  0.124   0.1133331825
 332 -0.067 -0.829  0.977  0.066  0.054  0.127   0.1133313437
 342 -0.067 -0.827  0.977  0.066  0.054  0.127   0.1133297356
 343 -0.067 -0.826  0.977  0.066  0.054  0.127   0.1133294073
 351 -0.067 -0.826  0.969  0.066  0.054  0.127   0.1133195191
 353 -0.067 -0.826  0.971  0.066  0.054  0.127   0.1133186516
 377 -0.067 -0.826  0.971  0.066  0.054  0.124   0.1133117106
 385 -0.068 -0.825  0.974  0.066  0.057  0.125   0.1133066911
 387 -0.068 -0.825  0.974  0.066  0.057  0.125   0.1133065548
 391 -0.068 -0.825  0.974  0.067  0.058  0.125   0.1133065333
 392 -0.068 -0.825  0.974  0.066  0.058  0.125   0.1133065138
 394 -0.068 -0.825  0.974  0.066  0.058  0.125   0.1133063039
 396 -0.072 -0.821  0.972  0.067  0.061  0.123   0.1132722121
 399 -0.080 -0.815  0.967  0.069  0.067  0.120   0.1132554500
 400 -0.079 -0.816  0.968  0.068  0.066  0.121   0.1132532188
 403 -0.078 -0.817  0.968  0.068  0.065  0.121   0.1132528868
 404 -0.078 -0.817  0.968  0.068  0.065  0.121   0.1132528844
 407 -0.078 -0.817  0.968  0.068  0.065  0.121   0.1132528798
 412 -0.078 -0.817  0.968  0.068  0.065  0.121   0.1132528550
 422 -0.083 -0.817  0.968  0.068  0.065  0.121   0.1132362651
 431 -0.083 -0.818  0.968  0.068  0.065  0.121   0.1132294246
 434 -0.083 -0.820  0.968  0.068  0.065  0.121   0.1132255578
 443 -0.083 -0.820  0.968  0.068  0.065  0.120   0.1132235906
 445 -0.082 -0.821  0.967  0.068  0.064  0.120   0.1132229610
 448 -0.082 -0.821  0.967  0.068  0.064  0.120   0.1132228962
 449 -0.082 -0.821  0.967  0.068  0.064  0.120   0.1132227859
 461 -0.082 -0.821  0.967  0.074  0.064  0.120   0.1132118212
 462 -0.082 -0.821  0.967  0.072  0.064  0.120   0.1132091714
 474 -0.082 -0.821  0.967  0.072  0.064  0.119   0.1132053249
 475 -0.082 -0.821  0.967  0.072  0.064  0.118   0.1132047668
 478 -0.087 -0.817  0.964  0.073  0.068  0.116   0.1131824348
 479 -0.095 -0.810  0.960  0.074  0.073  0.112   0.1131390998
 482 -0.099 -0.807  0.958  0.075  0.077  0.110   0.1131119494
 483 -0.102 -0.804  0.956  0.075  0.079  0.109   0.1131074225
 499 -0.104 -0.804  0.956  0.075  0.079  0.109   0.1131014052
 501 -0.105 -0.804  0.956  0.075  0.079  0.109   0.1131005014
 511 -0.105 -0.808  0.956  0.075  0.079  0.109   0.1130846651
 519 -0.106 -0.807  0.959  0.076  0.083  0.110   0.1130699390
 536 -0.106 -0.807  0.959  0.084  0.083  0.110   0.1128816484
 537 -0.106 -0.807  0.959  0.089  0.083  0.110   0.1128751056
 538 -0.106 -0.807  0.959  0.087  0.083  0.110   0.1128676517
 548 -0.106 -0.807  0.959  0.087  0.083  0.115   0.1128662636
 549 -0.106 -0.807  0.959  0.087  0.083  0.113   0.1128602595
 552 -0.110 -0.803  0.957  0.088  0.086  0.111   0.1128305572
 557 -0.111 -0.803  0.956  0.088  0.087  0.111   0.1128294968
 576 -0.108 -0.803  0.956  0.088  0.087  0.111   0.1128222835
 587 -0.108 -0.805  0.956  0.088  0.087  0.111   0.1128171444
 594 -0.107 -0.806  0.951  0.087  0.081  0.109   0.1127732266
 595 -0.106 -0.807  0.948  0.086  0.078  0.107   0.1127692540
 596 -0.106 -0.807  0.949  0.086  0.079  0.108   0.1127680820
 611 -0.106 -0.807  0.949  0.088  0.079  0.108   0.1127574404
 612 -0.106 -0.807  0.949  0.090  0.079  0.108   0.1127530221
 623 -0.106 -0.807  0.949  0.090  0.079  0.109   0.1127478686
 625 -0.106 -0.807  0.949  0.090  0.079  0.110   0.1127474919
 627 -0.111 -0.803  0.947  0.090  0.082  0.108   0.1127104249
 630 -0.114 -0.800  0.945  0.091  0.084  0.107   0.1127071319
 632 -0.113 -0.801  0.945  0.091  0.084  0.107   0.1127064769
 639 -0.113 -0.801  0.945  0.091  0.084  0.107   0.1127064125
 642 -0.114 -0.799  0.935  0.094  0.081  0.104   0.1126431123
 649 -0.115 -0.799  0.933  0.094  0.080  0.104   0.1126413567
 652 -0.115 -0.799  0.933  0.094  0.080  0.104   0.1126413171
 653 -0.115 -0.799  0.933  0.094  0.080  0.104   0.1126412457
 655 -0.115 -0.799  0.933  0.094  0.080  0.104   0.1126411918
 664 -0.113 -0.799  0.933  0.094  0.080  0.104   0.1126299976
 667 -0.109 -0.799  0.933  0.094  0.080  0.104   0.1126176033
 678 -0.109 -0.802  0.933  0.094  0.080  0.104   0.1126136576
 679 -0.109 -0.801  0.933  0.094  0.080  0.104   0.1126133458
 712 -0.109 -0.801  0.933  0.094  0.080  0.106   0.1126043608
 714 -0.109 -0.801  0.933  0.094  0.080  0.107   0.1126020746
 721 -0.109 -0.800  0.932  0.094  0.080  0.107   0.1126014395
 722 -0.109 -0.800  0.932  0.094  0.080  0.107   0.1126014007
 739 -0.107 -0.800  0.932  0.094  0.080  0.107   0.1125972864
 758 -0.108 -0.800  0.932  0.095  0.080  0.107   0.1125966119
 759 -0.108 -0.800  0.932  0.095  0.080  0.107   0.1125965534
 761 -0.108 -0.800  0.932  0.095  0.080  0.107   0.1125962962
 787 -0.108 -0.800  0.932  0.095  0.080  0.108   0.1125932688
 789 -0.108 -0.800  0.932  0.095  0.080  0.109   0.1125928915
Powell done niters = 9
Computing relative cost
 0  -25.0 -25.0 -25.0   1.020202
 1  -25.0 -25.0  25.0   0.986642
 2  -25.0  25.0 -25.0   1.020725
 3  -25.0  25.0  25.0   0.994088
 4   25.0 -25.0 -25.0   0.994992
 5   25.0 -25.0  25.0   0.988573
 6   25.0  25.0 -25.0   0.989970
 7   25.0  25.0  25.0   1.033843
REL:  8  0.112593    8.029034  1.003629 rel = 0.112186 
Number of iterations     9
Min cost was 0.112593
Number of FunctionCalls   806
TolPowell 0.000100
nMaxItersPowell 36
OptimizationTime 2.751000 sec
Parameters at optimum (transmm) -0.10783 -0.79971  0.93166
Parameters at optimum (rotdeg)  0.09459  0.08050  0.10862 
Final costs ----------------
Number of surface hits 2561
WM  Intensity    51.7578 +/-   6.4530
Ctx Intensity    63.4173 +/-   7.4812
Pct Contrast     20.1747 +/-  13.2974
Cost   0.1126
RelCost   0.2862
Reg at min cost was 
 0.998   0.049  -0.031  -0.138;
 0.035  -0.088   0.996   0.441;
 0.046  -0.995  -0.089   0.053;
 0.000   0.000   0.000   1.000;

Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat, type = 14 
Original Reg 
 0.998   0.050  -0.029  -0.026;
 0.033  -0.090   0.995   1.239;
 0.048  -0.995  -0.091  -0.881;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
-0.000   0.001   0.002   0.111;
-0.002  -0.002  -0.000   0.798;
 0.001   0.000  -0.002  -0.934;
 0.000   0.000   0.000   0.000;

Computing change in lh position
LH rmsDiffMean 1.369623
Computing change in rh position
Surface RMS Diff (mm) 1.306990 1.482164
mri_segreg done
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake6
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat
subject sub020
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376035448
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.998   0.049  -0.031  -0.138;
 0.035  -0.088   0.996   0.441;
 0.046  -0.995  -0.089   0.053;
 0.000   0.000   0.000   1.000;

Loading mov
Projecting LH Surfs
Loading lh.white surf
Loading lh.thickness for GM
GM Proj: 1 0.500000 2.000000
WM Proj: 0 0.500000 2.000000
Projecting RH Surfs
Loading rh.white surf
Loading rh.thickness
Projecting RH Surfs
Computing relative cost
 0  -25.0 -25.0 -25.0   1.013494
 1  -25.0 -25.0  25.0   1.006108
 2  -25.0  25.0 -25.0   0.997941
 3  -25.0  25.0  25.0   1.011419
 4   25.0 -25.0 -25.0   1.027242
 5   25.0 -25.0  25.0   1.003605
 6   25.0  25.0 -25.0   0.984781
 7   25.0  25.0  25.0   1.015732
REL:  8  0.129034    8.060323  1.007540 rel = 0.128068 
Initial costs ----------------
Number of surface hits 255490
WM  Intensity    51.9075 +/-   7.0033
Ctx Intensity    63.3654 +/-   7.6848
Pct Contrast     19.8445 +/-  13.5786
Cost   0.1290
RelCost   0.1281

------------------------------------
Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1259   0.1259  0.0
     3  -0.1000  -0.1000  -0.1000  -0.1000   0.0000  -0.1000      0.1220   0.1220  0.0
     9  -0.1000  -0.1000  -0.1000   0.0000  -0.1000  -0.1000      0.1209   0.1209  0.0
    12  -0.1000  -0.1000  -0.1000   0.0000   0.0000  -0.1000      0.1187   0.1187  0.0
    39  -0.1000  -0.1000   0.0000   0.0000   0.0000  -0.1000      0.1176   0.1176  0.0
   103  -0.1000   0.0000  -0.1000   0.1000   0.0000   0.0000      0.1175   0.1175  0.0
   120  -0.1000   0.0000   0.0000   0.0000   0.0000  -0.1000      0.1158   0.1158  0.0
   337   0.0000   0.0000  -0.1000   0.0000   0.0000   0.0000      0.1152   0.1152  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.1126   0.1126  0.0
Brute Force --------------------------
Min cost was 0.112593
Number of iterations   729
Search time 3.057000 sec
Parameters at best (transmm, rotdeg)
  0.000   0.000   0.000  0.000  0.000  0.000 
--------------------------------------------

Starting Powell Minimization
Init Powel Params dof = 6
0 0
1 0
2 0
3 0
4 0
5 0
   7  0.164  0.000  0.000  0.000  0.000  0.000   0.1275259739
   8  0.157  0.000  0.000  0.000  0.000  0.000   0.1275049393
   9  0.142  0.000  0.000  0.000  0.000  0.000   0.1274834528
  10  0.138  0.000  0.000  0.000  0.000  0.000   0.1274822781
  11  0.137  0.000  0.000  0.000  0.000  0.000   0.1274819129
  15  0.133  0.000  0.000  0.000  0.000  0.000   0.1274811044
  24  0.133  0.005  0.000  0.000  0.000  0.000   0.1274772267
  25  0.133  0.007  0.000  0.000  0.000  0.000   0.1274767438
  26  0.133  0.008  0.000  0.000  0.000  0.000   0.1274765522
  34  0.133  0.008 -0.017  0.000  0.000  0.000   0.1274134958
  35  0.133  0.008 -0.037  0.000  0.000  0.000   0.1273929401
  36  0.133  0.008 -0.034  0.000  0.000  0.000   0.1273906993
  37  0.133  0.008 -0.032  0.000  0.000  0.000   0.1273902753
  48  0.133  0.008 -0.032  0.001  0.000  0.000   0.1273900855
  56  0.133  0.008 -0.032  0.001 -0.080  0.000   0.1262505055
  57  0.133  0.008 -0.032  0.001 -0.134  0.000   0.1262437089
  58  0.133  0.008 -0.032  0.001 -0.107  0.000   0.1261645037
  60  0.133  0.008 -0.032  0.001 -0.108  0.000   0.1261643550
  69  0.133  0.008 -0.032  0.001 -0.108 -0.098   0.1256937495
  70  0.133  0.008 -0.032  0.001 -0.108 -0.077   0.1256835779
  71  0.133  0.008 -0.032  0.001 -0.108 -0.084   0.1256831582
  72  0.133  0.008 -0.032  0.001 -0.108 -0.081   0.1256830059
  74  0.133  0.008 -0.032  0.001 -0.108 -0.080   0.1256829118
  98  0.133 -0.001 -0.032  0.001 -0.108 -0.080   0.1256736232
 100  0.133 -0.003 -0.032  0.001 -0.108 -0.080   0.1256732318
 109  0.133 -0.004 -0.033  0.001 -0.108 -0.080   0.1256693110
 110  0.133 -0.004 -0.064  0.001 -0.108 -0.080   0.1256062685
 112  0.133 -0.004 -0.066  0.001 -0.108 -0.080   0.1256062499
 121  0.133 -0.004 -0.066  0.007 -0.108 -0.080   0.1255985866
 122  0.133 -0.004 -0.066  0.008 -0.108 -0.080   0.1255984469
 131  0.133 -0.004 -0.066  0.008 -0.134 -0.080   0.1255457980
 133  0.133 -0.004 -0.066  0.008 -0.130 -0.080   0.1255446129
 134  0.133 -0.004 -0.066  0.008 -0.131 -0.080   0.1255444568
 142  0.133 -0.004 -0.066  0.008 -0.131 -0.096   0.1255422605
 143  0.133 -0.004 -0.066  0.008 -0.131 -0.089   0.1255369565
 145  0.133 -0.004 -0.066  0.008 -0.131 -0.090   0.1255369215
 157  0.136 -0.004 -0.066  0.008 -0.131 -0.090   0.1255360611
 177  0.136 -0.004 -0.064  0.008 -0.131 -0.090   0.1255360562
 179  0.136 -0.004 -0.065  0.008 -0.131 -0.090   0.1255358859
 188  0.136 -0.004 -0.065  0.011 -0.131 -0.090   0.1255352140
 190  0.136 -0.004 -0.065  0.012 -0.131 -0.090   0.1255351838
 200  0.136 -0.004 -0.065  0.012 -0.132 -0.090   0.1255348151
 211  0.136 -0.004 -0.065  0.012 -0.132 -0.089   0.1255347148
 221  0.137 -0.004 -0.065  0.012 -0.132 -0.089   0.1255345964
 230  0.137 -0.003 -0.065  0.012 -0.132 -0.089   0.1255344417
 231  0.137 -0.002 -0.065  0.012 -0.132 -0.089   0.1255343620
 242  0.137 -0.002 -0.067  0.012 -0.132 -0.089   0.1255339338
 243  0.137 -0.002 -0.068  0.012 -0.132 -0.089   0.1255339324
 253  0.137 -0.002 -0.068  0.013 -0.132 -0.089   0.1255337315
 274  0.137 -0.002 -0.068  0.013 -0.132 -0.088   0.1255335548
 294  0.137 -0.001 -0.068  0.013 -0.132 -0.088   0.1255335233
 334  0.137 -0.001 -0.068  0.013 -0.132 -0.087   0.1255335115
 344  0.138 -0.001 -0.068  0.013 -0.132 -0.087   0.1255333964
Powell done niters = 6
Computing relative cost
 0  -25.0 -25.0 -25.0   1.013858
 1  -25.0 -25.0  25.0   1.005302
 2  -25.0  25.0 -25.0   0.998067
 3  -25.0  25.0  25.0   1.012334
 4   25.0 -25.0 -25.0   1.027999
 5   25.0 -25.0  25.0   1.002595
 6   25.0  25.0 -25.0   0.985033
 7   25.0  25.0  25.0   1.016447
REL:  8  0.125533    8.061634  1.007704 rel = 0.124574 
Number of iterations     6
Min cost was 0.125533
Number of FunctionCalls   457
TolPowell 0.000000
nMaxItersPowell 36
OptimizationTime 57.502000 sec
Parameters at optimum (transmm)  0.13841 -0.00092 -0.06751
Parameters at optimum (rotdeg)  0.01267 -0.13233 -0.08668 
Final costs ----------------
Number of surface hits 255490
WM  Intensity    51.9007 +/-   6.9972
Ctx Intensity    63.3499 +/-   7.6561
Pct Contrast     19.8367 +/-  13.5063
Cost   0.1255
RelCost   0.1281
Reg at min cost was 
 0.998   0.051  -0.029   0.001;
 0.033  -0.088   0.996   0.440;
 0.049  -0.995  -0.089  -0.015;
 0.000   0.000   0.000   1.000;

Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat, type = 14 
Original Reg 
 0.998   0.049  -0.031  -0.138;
 0.035  -0.088   0.996   0.441;
 0.046  -0.995  -0.089   0.053;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
 0.000  -0.002  -0.002  -0.139;
 0.002  -0.000  -0.000   0.001;
-0.002  -0.000  -0.000   0.068;
 0.000   0.000   0.000   0.000;

Computing change in lh position
LH rmsDiffMean 0.215691
Computing change in rh position
Surface RMS Diff (mm) 0.196734 0.385326
mri_segreg done
tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.lta
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
---- Input registration matrix --------
 0.998   0.051  -0.029   0.001;
 0.033  -0.088   0.996   0.440;
 0.049  -0.995  -0.089  -0.015;
 0.000   0.000   0.000   1.000;
float2int = 0
---------------------------------------
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz
Tmov: --------------------
-0.700   0.000   0.000   95.890;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 0, float2int = 0
---- Input registration matrix --------
 0.998   0.051  -0.029   0.001;
 0.033  -0.088   0.996   0.440;
 0.049  -0.995  -0.089  -0.015;
 0.000   0.000   0.000   1.000;
Determinant 1
subject = sub020
RegMat ---------------------------
 0.998   0.051  -0.029   0.001;
 0.033  -0.088   0.996   0.440;
 0.049  -0.995  -0.089  -0.015;
 0.000   0.000   0.000   1.000;
transformed matrix:
 1.000  -0.001  -0.001  -0.001;
 0.001   1.000   0.002   0.066;
 0.001  -0.002   1.000  -0.380;
 0.000   0.000   0.000   1.000;
transformed matrix:
 0.699   0.032  -0.022   30.355;
-0.020  -0.060  -0.664   270.085;
-0.036   0.663  -0.058   16.840;
 0.000   0.000   0.000   1.000;
Cleaning up
 
Started at Thu Aug 8 22:15:45 CEST 2013 
Ended   at Thu Aug  8 22:28:45 CEST 2013
BBR-Run-Time-Sec 780
 
bbregister Done
To check results, run:
tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --surf