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- Logfile for bbregister
- Thu Aug 8 22:15:45 CEST 2013
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
- /opt/freesurfer/5.3.0/bin/bbregister --s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.lta --init-fsl --T2
- $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $
- Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- FREESURFER_HOME /opt/freesurfer/5.3.0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.998287, -0.0504193, 0.0296894)
- j_ras = (-0.0475266, 0.9947, 0.0911741)
- k_ras = (0.034129, -0.0896069, 0.995392)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii...
- fslregister --s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister --dof 6 --fsvol brainmask.mgz
- Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fslregister.log
- Thu Aug 8 22:15:50 CEST 2013
- --s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister --dof 6 --fsvol brainmask.mgz
- $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $
- snake6
- Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- nIters 1
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/brainmask.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 6.98492e-09, -3.72529e-09)
- j_ras = (3.72529e-09, 0, -1)
- k_ras = (-1.00117e-08, 1, 7.45058e-09)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii...
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii --frame 0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii --frame 0
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.998287, -0.0504193, 0.0296894)
- j_ras = (-0.0475266, 0.9947, 0.0911741)
- k_ras = (0.034129, -0.0896069, 0.995392)
- keeping frame 0
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii...
- Mov determinant is -0.311079
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/reg0.19121.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat0 --s sub020 --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/reg0.19121.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.890;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 1, float2int = 0
- Computing reg from header (and possibly input matrix)
- ---- Input registration matrix (computed) --------
- 0.998 0.050 -0.030 -0.000;
- 0.034 -0.090 0.995 0.000;
- 0.048 -0.995 -0.091 0.000;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.998 0.050 -0.030 -0.000;
- 0.034 -0.090 0.995 0.000;
- 0.048 -0.995 -0.091 0.000;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub020
- RegMat ---------------------------
- 0.998 0.050 -0.030 -0.000;
- 0.034 -0.090 0.995 0.000;
- 0.048 -0.995 -0.091 0.000;
- 0.000 0.000 0.000 1.000;
- FSLOUTPUTTYPE NIFTI
- tkreg2FSL: mov det = -0.311079, ref det = -1
- Thu Aug 8 22:15:58 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat0
- Thu Aug 8 22:20:31 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch
- tkregister2_cmdl --s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- ---- FSL registration matrix --------
- 0.998 0.048 -0.033 30.393;
- -0.029 -0.091 -0.995 271.146;
- -0.050 0.995 -0.090 16.219;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.890;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- FSLOUTPUTTYPE NIFTI
- fsl2TkReg: mov det = -0.311079, ref det = -1
- ---- Input registration matrix (computed) --------
- 0.998 0.050 -0.029 -0.026;
- 0.033 -0.090 0.995 1.239;
- 0.048 -0.995 -0.091 -0.881;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.998 0.050 -0.029 -0.026;
- 0.033 -0.090 0.995 1.239;
- 0.048 -0.995 -0.091 -0.881;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub020
- RegMat ---------------------------
- 0.998 0.050 -0.029 -0.026;
- 0.033 -0.090 0.995 1.239;
- 0.048 -0.995 -0.091 -0.881;
- 0.000 0.000 0.000 1.000;
-
- Started at Thu Aug 8 22:15:50 CEST 2013
- Ended at Thu Aug 8 22:26:43 CEST 2013
-
- fslregister Done
-
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --surf orig
-
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- sysname Linux
- hostname snake6
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat
- subject sub020
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 100
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000100
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376959936
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.998 0.050 -0.029 -0.026;
- 0.033 -0.090 0.995 1.239;
- 0.048 -0.995 -0.091 -0.881;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.009564
- 1 -25.0 -25.0 25.0 0.989784
- 2 -25.0 25.0 -25.0 0.998370
- 3 -25.0 25.0 25.0 1.044732
- 4 25.0 -25.0 -25.0 1.015749
- 5 25.0 -25.0 25.0 1.018151
- 6 25.0 25.0 -25.0 1.020733
- 7 25.0 25.0 25.0 1.002708
- REL: 8 0.289753 8.099791 1.012474 rel = 0.286183
- Initial costs ----------------
- Number of surface hits 2561
- WM Intensity 52.3774 +/- 7.4491
- Ctx Intensity 63.9203 +/- 10.2015
- Pct Contrast 19.3608 +/- 18.6507
- Cost 0.2898
- RelCost 0.2862
- ------------------------------------
- Brute force preopt -4 4 4, n = 729
- 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9893 0.9893 0.0
- 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.9767 0.9767 0.0
- 6 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 -4.0000 0.9609 0.9609 0.0
- 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.8787 0.8787 0.0
- 21 -4.0000 -4.0000 -4.0000 4.0000 0.0000 -4.0000 0.8564 0.8564 0.0
- 39 -4.0000 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.8233 0.8233 0.0
- 102 -4.0000 0.0000 -4.0000 4.0000 0.0000 -4.0000 0.7725 0.7725 0.0
- 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.6807 0.6807 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2898 0.2898 0.0
- Brute Force --------------------------
- Min cost was 0.289753
- Number of iterations 729
- Search time 3.750000 sec
- Parameters at best (transmm, rotdeg)
- 0.000 0.000 0.000 0.000 0.000 0.000
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 0
- 1 0
- 2 0
- 3 0
- 4 0
- 5 0
- 9 -0.090 0.000 0.000 0.000 0.000 0.000 0.2897133289
- 10 -0.047 0.000 0.000 0.000 0.000 0.000 0.2896632757
- 11 -0.052 0.000 0.000 0.000 0.000 0.000 0.2896421440
- 12 -0.065 0.000 0.000 0.000 0.000 0.000 0.2895030126
- 13 -0.075 0.000 0.000 0.000 0.000 0.000 0.2894471780
- 19 -0.075 -1.618 0.000 0.000 0.000 0.000 0.2674030719
- 20 -0.075 -0.895 0.000 0.000 0.000 0.000 0.2215231083
- 25 -0.075 -0.765 0.000 0.000 0.000 0.000 0.2195910650
- 26 -0.075 -0.782 0.000 0.000 0.000 0.000 0.2188661467
- 28 -0.075 -0.795 0.000 0.000 0.000 0.000 0.2186373520
- 33 -0.075 -0.795 1.000 0.000 0.000 0.000 0.1197352454
- 39 -0.075 -0.795 0.984 0.000 0.000 0.000 0.1197116263
- 42 -0.075 -0.795 0.985 0.000 0.000 0.000 0.1197115578
- 49 -0.075 -0.795 0.985 0.006 0.000 0.000 0.1194757737
- 50 -0.075 -0.795 0.985 0.073 0.000 0.000 0.1185802749
- 52 -0.075 -0.795 0.985 0.056 0.000 0.000 0.1183779642
- 54 -0.075 -0.795 0.985 0.057 0.000 0.000 0.1183773232
- 64 -0.075 -0.795 0.985 0.057 0.025 0.000 0.1182287058
- 65 -0.075 -0.795 0.985 0.057 0.021 0.000 0.1182084040
- 66 -0.075 -0.795 0.985 0.057 0.018 0.000 0.1182066430
- 68 -0.075 -0.795 0.985 0.057 0.019 0.000 0.1182064247
- 75 -0.075 -0.795 0.985 0.057 0.019 0.042 0.1162862375
- 76 -0.075 -0.795 0.985 0.057 0.019 0.140 0.1159126150
- 78 -0.075 -0.795 0.985 0.057 0.019 0.124 0.1157646068
- 79 -0.075 -0.795 0.985 0.057 0.019 0.103 0.1155614615
- 81 -0.075 -0.795 0.985 0.057 0.019 0.095 0.1155392746
- 83 -0.075 -0.795 0.985 0.057 0.019 0.096 0.1155390716
- 85 -0.075 -0.795 0.985 0.057 0.019 0.097 0.1155390022
- 95 -0.055 -0.795 0.985 0.057 0.019 0.097 0.1152808532
- 97 -0.053 -0.795 0.985 0.057 0.019 0.097 0.1152789001
- 105 -0.053 -0.814 0.985 0.057 0.019 0.097 0.1144369243
- 108 -0.053 -0.834 0.985 0.057 0.019 0.097 0.1141406839
- 110 -0.053 -0.833 0.985 0.057 0.019 0.097 0.1141394298
- 119 -0.053 -0.833 0.970 0.057 0.019 0.097 0.1140526486
- 121 -0.053 -0.833 0.971 0.057 0.019 0.097 0.1140517714
- 140 -0.053 -0.833 0.971 0.057 0.034 0.097 0.1138511865
- 141 -0.053 -0.833 0.971 0.057 0.037 0.097 0.1138506507
- 142 -0.053 -0.833 0.971 0.057 0.038 0.097 0.1138499119
- 144 -0.053 -0.833 0.971 0.057 0.041 0.097 0.1138485458
- 146 -0.053 -0.833 0.971 0.057 0.040 0.097 0.1138483746
- 155 -0.053 -0.833 0.971 0.057 0.040 0.123 0.1135440152
- 156 -0.053 -0.833 0.971 0.057 0.040 0.124 0.1135424953
- 157 -0.053 -0.833 0.971 0.057 0.040 0.126 0.1135406260
- 160 -0.053 -0.833 0.971 0.057 0.040 0.127 0.1135396864
- 171 -0.054 -0.833 0.971 0.057 0.040 0.127 0.1135367739
- 172 -0.056 -0.833 0.971 0.057 0.040 0.127 0.1135355177
- 183 -0.056 -0.831 0.971 0.057 0.040 0.127 0.1135331747
- 194 -0.056 -0.831 0.980 0.057 0.040 0.127 0.1135007806
- 196 -0.056 -0.831 0.979 0.057 0.040 0.127 0.1134999047
- 207 -0.056 -0.831 0.979 0.059 0.040 0.127 0.1134947058
- 216 -0.056 -0.831 0.979 0.059 0.045 0.127 0.1134266010
- 217 -0.056 -0.831 0.979 0.059 0.049 0.127 0.1134182977
- 229 -0.056 -0.831 0.979 0.059 0.049 0.133 0.1134129142
- 231 -0.056 -0.831 0.979 0.059 0.049 0.131 0.1134106662
- 239 -0.057 -0.830 0.982 0.060 0.052 0.132 0.1133981122
- 240 -0.057 -0.830 0.982 0.060 0.053 0.132 0.1133975152
- 242 -0.057 -0.830 0.982 0.060 0.053 0.132 0.1133972942
- 255 -0.063 -0.830 0.982 0.060 0.053 0.132 0.1133716336
- 275 -0.063 -0.830 0.978 0.060 0.053 0.132 0.1133716322
- 276 -0.063 -0.830 0.977 0.060 0.053 0.132 0.1133696908
- 277 -0.063 -0.830 0.976 0.060 0.053 0.132 0.1133684141
- 287 -0.063 -0.830 0.976 0.064 0.053 0.132 0.1133547938
- 292 -0.063 -0.830 0.976 0.065 0.053 0.132 0.1133540618
- 303 -0.063 -0.830 0.976 0.065 0.053 0.128 0.1133421952
- 304 -0.063 -0.830 0.976 0.065 0.053 0.127 0.1133421643
- 311 -0.064 -0.829 0.979 0.066 0.056 0.128 0.1133410216
- 312 -0.063 -0.829 0.977 0.066 0.055 0.128 0.1133394997
- 314 -0.063 -0.829 0.977 0.066 0.054 0.127 0.1133391143
- 320 -0.063 -0.829 0.977 0.066 0.054 0.127 0.1133390818
- 322 -0.063 -0.829 0.977 0.066 0.054 0.127 0.1133389740
- 323 -0.071 -0.828 0.975 0.072 0.059 0.124 0.1133331825
- 332 -0.067 -0.829 0.977 0.066 0.054 0.127 0.1133313437
- 342 -0.067 -0.827 0.977 0.066 0.054 0.127 0.1133297356
- 343 -0.067 -0.826 0.977 0.066 0.054 0.127 0.1133294073
- 351 -0.067 -0.826 0.969 0.066 0.054 0.127 0.1133195191
- 353 -0.067 -0.826 0.971 0.066 0.054 0.127 0.1133186516
- 377 -0.067 -0.826 0.971 0.066 0.054 0.124 0.1133117106
- 385 -0.068 -0.825 0.974 0.066 0.057 0.125 0.1133066911
- 387 -0.068 -0.825 0.974 0.066 0.057 0.125 0.1133065548
- 391 -0.068 -0.825 0.974 0.067 0.058 0.125 0.1133065333
- 392 -0.068 -0.825 0.974 0.066 0.058 0.125 0.1133065138
- 394 -0.068 -0.825 0.974 0.066 0.058 0.125 0.1133063039
- 396 -0.072 -0.821 0.972 0.067 0.061 0.123 0.1132722121
- 399 -0.080 -0.815 0.967 0.069 0.067 0.120 0.1132554500
- 400 -0.079 -0.816 0.968 0.068 0.066 0.121 0.1132532188
- 403 -0.078 -0.817 0.968 0.068 0.065 0.121 0.1132528868
- 404 -0.078 -0.817 0.968 0.068 0.065 0.121 0.1132528844
- 407 -0.078 -0.817 0.968 0.068 0.065 0.121 0.1132528798
- 412 -0.078 -0.817 0.968 0.068 0.065 0.121 0.1132528550
- 422 -0.083 -0.817 0.968 0.068 0.065 0.121 0.1132362651
- 431 -0.083 -0.818 0.968 0.068 0.065 0.121 0.1132294246
- 434 -0.083 -0.820 0.968 0.068 0.065 0.121 0.1132255578
- 443 -0.083 -0.820 0.968 0.068 0.065 0.120 0.1132235906
- 445 -0.082 -0.821 0.967 0.068 0.064 0.120 0.1132229610
- 448 -0.082 -0.821 0.967 0.068 0.064 0.120 0.1132228962
- 449 -0.082 -0.821 0.967 0.068 0.064 0.120 0.1132227859
- 461 -0.082 -0.821 0.967 0.074 0.064 0.120 0.1132118212
- 462 -0.082 -0.821 0.967 0.072 0.064 0.120 0.1132091714
- 474 -0.082 -0.821 0.967 0.072 0.064 0.119 0.1132053249
- 475 -0.082 -0.821 0.967 0.072 0.064 0.118 0.1132047668
- 478 -0.087 -0.817 0.964 0.073 0.068 0.116 0.1131824348
- 479 -0.095 -0.810 0.960 0.074 0.073 0.112 0.1131390998
- 482 -0.099 -0.807 0.958 0.075 0.077 0.110 0.1131119494
- 483 -0.102 -0.804 0.956 0.075 0.079 0.109 0.1131074225
- 499 -0.104 -0.804 0.956 0.075 0.079 0.109 0.1131014052
- 501 -0.105 -0.804 0.956 0.075 0.079 0.109 0.1131005014
- 511 -0.105 -0.808 0.956 0.075 0.079 0.109 0.1130846651
- 519 -0.106 -0.807 0.959 0.076 0.083 0.110 0.1130699390
- 536 -0.106 -0.807 0.959 0.084 0.083 0.110 0.1128816484
- 537 -0.106 -0.807 0.959 0.089 0.083 0.110 0.1128751056
- 538 -0.106 -0.807 0.959 0.087 0.083 0.110 0.1128676517
- 548 -0.106 -0.807 0.959 0.087 0.083 0.115 0.1128662636
- 549 -0.106 -0.807 0.959 0.087 0.083 0.113 0.1128602595
- 552 -0.110 -0.803 0.957 0.088 0.086 0.111 0.1128305572
- 557 -0.111 -0.803 0.956 0.088 0.087 0.111 0.1128294968
- 576 -0.108 -0.803 0.956 0.088 0.087 0.111 0.1128222835
- 587 -0.108 -0.805 0.956 0.088 0.087 0.111 0.1128171444
- 594 -0.107 -0.806 0.951 0.087 0.081 0.109 0.1127732266
- 595 -0.106 -0.807 0.948 0.086 0.078 0.107 0.1127692540
- 596 -0.106 -0.807 0.949 0.086 0.079 0.108 0.1127680820
- 611 -0.106 -0.807 0.949 0.088 0.079 0.108 0.1127574404
- 612 -0.106 -0.807 0.949 0.090 0.079 0.108 0.1127530221
- 623 -0.106 -0.807 0.949 0.090 0.079 0.109 0.1127478686
- 625 -0.106 -0.807 0.949 0.090 0.079 0.110 0.1127474919
- 627 -0.111 -0.803 0.947 0.090 0.082 0.108 0.1127104249
- 630 -0.114 -0.800 0.945 0.091 0.084 0.107 0.1127071319
- 632 -0.113 -0.801 0.945 0.091 0.084 0.107 0.1127064769
- 639 -0.113 -0.801 0.945 0.091 0.084 0.107 0.1127064125
- 642 -0.114 -0.799 0.935 0.094 0.081 0.104 0.1126431123
- 649 -0.115 -0.799 0.933 0.094 0.080 0.104 0.1126413567
- 652 -0.115 -0.799 0.933 0.094 0.080 0.104 0.1126413171
- 653 -0.115 -0.799 0.933 0.094 0.080 0.104 0.1126412457
- 655 -0.115 -0.799 0.933 0.094 0.080 0.104 0.1126411918
- 664 -0.113 -0.799 0.933 0.094 0.080 0.104 0.1126299976
- 667 -0.109 -0.799 0.933 0.094 0.080 0.104 0.1126176033
- 678 -0.109 -0.802 0.933 0.094 0.080 0.104 0.1126136576
- 679 -0.109 -0.801 0.933 0.094 0.080 0.104 0.1126133458
- 712 -0.109 -0.801 0.933 0.094 0.080 0.106 0.1126043608
- 714 -0.109 -0.801 0.933 0.094 0.080 0.107 0.1126020746
- 721 -0.109 -0.800 0.932 0.094 0.080 0.107 0.1126014395
- 722 -0.109 -0.800 0.932 0.094 0.080 0.107 0.1126014007
- 739 -0.107 -0.800 0.932 0.094 0.080 0.107 0.1125972864
- 758 -0.108 -0.800 0.932 0.095 0.080 0.107 0.1125966119
- 759 -0.108 -0.800 0.932 0.095 0.080 0.107 0.1125965534
- 761 -0.108 -0.800 0.932 0.095 0.080 0.107 0.1125962962
- 787 -0.108 -0.800 0.932 0.095 0.080 0.108 0.1125932688
- 789 -0.108 -0.800 0.932 0.095 0.080 0.109 0.1125928915
- Powell done niters = 9
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.020202
- 1 -25.0 -25.0 25.0 0.986642
- 2 -25.0 25.0 -25.0 1.020725
- 3 -25.0 25.0 25.0 0.994088
- 4 25.0 -25.0 -25.0 0.994992
- 5 25.0 -25.0 25.0 0.988573
- 6 25.0 25.0 -25.0 0.989970
- 7 25.0 25.0 25.0 1.033843
- REL: 8 0.112593 8.029034 1.003629 rel = 0.112186
- Number of iterations 9
- Min cost was 0.112593
- Number of FunctionCalls 806
- TolPowell 0.000100
- nMaxItersPowell 36
- OptimizationTime 2.751000 sec
- Parameters at optimum (transmm) -0.10783 -0.79971 0.93166
- Parameters at optimum (rotdeg) 0.09459 0.08050 0.10862
- Final costs ----------------
- Number of surface hits 2561
- WM Intensity 51.7578 +/- 6.4530
- Ctx Intensity 63.4173 +/- 7.4812
- Pct Contrast 20.1747 +/- 13.2974
- Cost 0.1126
- RelCost 0.2862
- Reg at min cost was
- 0.998 0.049 -0.031 -0.138;
- 0.035 -0.088 0.996 0.441;
- 0.046 -0.995 -0.089 0.053;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat, type = 14
- Original Reg
- 0.998 0.050 -0.029 -0.026;
- 0.033 -0.090 0.995 1.239;
- 0.048 -0.995 -0.091 -0.881;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- -0.000 0.001 0.002 0.111;
- -0.002 -0.002 -0.000 0.798;
- 0.001 0.000 -0.002 -0.934;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 1.369623
- Computing change in rh position
- Surface RMS Diff (mm) 1.306990 1.482164
- mri_segreg done
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake6
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat
- subject sub020
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376035448
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.998 0.049 -0.031 -0.138;
- 0.035 -0.088 0.996 0.441;
- 0.046 -0.995 -0.089 0.053;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.013494
- 1 -25.0 -25.0 25.0 1.006108
- 2 -25.0 25.0 -25.0 0.997941
- 3 -25.0 25.0 25.0 1.011419
- 4 25.0 -25.0 -25.0 1.027242
- 5 25.0 -25.0 25.0 1.003605
- 6 25.0 25.0 -25.0 0.984781
- 7 25.0 25.0 25.0 1.015732
- REL: 8 0.129034 8.060323 1.007540 rel = 0.128068
- Initial costs ----------------
- Number of surface hits 255490
- WM Intensity 51.9075 +/- 7.0033
- Ctx Intensity 63.3654 +/- 7.6848
- Pct Contrast 19.8445 +/- 13.5786
- Cost 0.1290
- RelCost 0.1281
- ------------------------------------
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1259 0.1259 0.0
- 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1220 0.1220 0.0
- 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1209 0.1209 0.0
- 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1187 0.1187 0.0
- 39 -0.1000 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.1176 0.1176 0.0
- 103 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.0000 0.1175 0.1175 0.0
- 120 -0.1000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1158 0.1158 0.0
- 337 0.0000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.1152 0.1152 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1126 0.1126 0.0
- Brute Force --------------------------
- Min cost was 0.112593
- Number of iterations 729
- Search time 3.057000 sec
- Parameters at best (transmm, rotdeg)
- 0.000 0.000 0.000 0.000 0.000 0.000
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 0
- 1 0
- 2 0
- 3 0
- 4 0
- 5 0
- 7 0.164 0.000 0.000 0.000 0.000 0.000 0.1275259739
- 8 0.157 0.000 0.000 0.000 0.000 0.000 0.1275049393
- 9 0.142 0.000 0.000 0.000 0.000 0.000 0.1274834528
- 10 0.138 0.000 0.000 0.000 0.000 0.000 0.1274822781
- 11 0.137 0.000 0.000 0.000 0.000 0.000 0.1274819129
- 15 0.133 0.000 0.000 0.000 0.000 0.000 0.1274811044
- 24 0.133 0.005 0.000 0.000 0.000 0.000 0.1274772267
- 25 0.133 0.007 0.000 0.000 0.000 0.000 0.1274767438
- 26 0.133 0.008 0.000 0.000 0.000 0.000 0.1274765522
- 34 0.133 0.008 -0.017 0.000 0.000 0.000 0.1274134958
- 35 0.133 0.008 -0.037 0.000 0.000 0.000 0.1273929401
- 36 0.133 0.008 -0.034 0.000 0.000 0.000 0.1273906993
- 37 0.133 0.008 -0.032 0.000 0.000 0.000 0.1273902753
- 48 0.133 0.008 -0.032 0.001 0.000 0.000 0.1273900855
- 56 0.133 0.008 -0.032 0.001 -0.080 0.000 0.1262505055
- 57 0.133 0.008 -0.032 0.001 -0.134 0.000 0.1262437089
- 58 0.133 0.008 -0.032 0.001 -0.107 0.000 0.1261645037
- 60 0.133 0.008 -0.032 0.001 -0.108 0.000 0.1261643550
- 69 0.133 0.008 -0.032 0.001 -0.108 -0.098 0.1256937495
- 70 0.133 0.008 -0.032 0.001 -0.108 -0.077 0.1256835779
- 71 0.133 0.008 -0.032 0.001 -0.108 -0.084 0.1256831582
- 72 0.133 0.008 -0.032 0.001 -0.108 -0.081 0.1256830059
- 74 0.133 0.008 -0.032 0.001 -0.108 -0.080 0.1256829118
- 98 0.133 -0.001 -0.032 0.001 -0.108 -0.080 0.1256736232
- 100 0.133 -0.003 -0.032 0.001 -0.108 -0.080 0.1256732318
- 109 0.133 -0.004 -0.033 0.001 -0.108 -0.080 0.1256693110
- 110 0.133 -0.004 -0.064 0.001 -0.108 -0.080 0.1256062685
- 112 0.133 -0.004 -0.066 0.001 -0.108 -0.080 0.1256062499
- 121 0.133 -0.004 -0.066 0.007 -0.108 -0.080 0.1255985866
- 122 0.133 -0.004 -0.066 0.008 -0.108 -0.080 0.1255984469
- 131 0.133 -0.004 -0.066 0.008 -0.134 -0.080 0.1255457980
- 133 0.133 -0.004 -0.066 0.008 -0.130 -0.080 0.1255446129
- 134 0.133 -0.004 -0.066 0.008 -0.131 -0.080 0.1255444568
- 142 0.133 -0.004 -0.066 0.008 -0.131 -0.096 0.1255422605
- 143 0.133 -0.004 -0.066 0.008 -0.131 -0.089 0.1255369565
- 145 0.133 -0.004 -0.066 0.008 -0.131 -0.090 0.1255369215
- 157 0.136 -0.004 -0.066 0.008 -0.131 -0.090 0.1255360611
- 177 0.136 -0.004 -0.064 0.008 -0.131 -0.090 0.1255360562
- 179 0.136 -0.004 -0.065 0.008 -0.131 -0.090 0.1255358859
- 188 0.136 -0.004 -0.065 0.011 -0.131 -0.090 0.1255352140
- 190 0.136 -0.004 -0.065 0.012 -0.131 -0.090 0.1255351838
- 200 0.136 -0.004 -0.065 0.012 -0.132 -0.090 0.1255348151
- 211 0.136 -0.004 -0.065 0.012 -0.132 -0.089 0.1255347148
- 221 0.137 -0.004 -0.065 0.012 -0.132 -0.089 0.1255345964
- 230 0.137 -0.003 -0.065 0.012 -0.132 -0.089 0.1255344417
- 231 0.137 -0.002 -0.065 0.012 -0.132 -0.089 0.1255343620
- 242 0.137 -0.002 -0.067 0.012 -0.132 -0.089 0.1255339338
- 243 0.137 -0.002 -0.068 0.012 -0.132 -0.089 0.1255339324
- 253 0.137 -0.002 -0.068 0.013 -0.132 -0.089 0.1255337315
- 274 0.137 -0.002 -0.068 0.013 -0.132 -0.088 0.1255335548
- 294 0.137 -0.001 -0.068 0.013 -0.132 -0.088 0.1255335233
- 334 0.137 -0.001 -0.068 0.013 -0.132 -0.087 0.1255335115
- 344 0.138 -0.001 -0.068 0.013 -0.132 -0.087 0.1255333964
- Powell done niters = 6
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.013858
- 1 -25.0 -25.0 25.0 1.005302
- 2 -25.0 25.0 -25.0 0.998067
- 3 -25.0 25.0 25.0 1.012334
- 4 25.0 -25.0 -25.0 1.027999
- 5 25.0 -25.0 25.0 1.002595
- 6 25.0 25.0 -25.0 0.985033
- 7 25.0 25.0 25.0 1.016447
- REL: 8 0.125533 8.061634 1.007704 rel = 0.124574
- Number of iterations 6
- Min cost was 0.125533
- Number of FunctionCalls 457
- TolPowell 0.000000
- nMaxItersPowell 36
- OptimizationTime 57.502000 sec
- Parameters at optimum (transmm) 0.13841 -0.00092 -0.06751
- Parameters at optimum (rotdeg) 0.01267 -0.13233 -0.08668
- Final costs ----------------
- Number of surface hits 255490
- WM Intensity 51.9007 +/- 6.9972
- Ctx Intensity 63.3499 +/- 7.6561
- Pct Contrast 19.8367 +/- 13.5063
- Cost 0.1255
- RelCost 0.1281
- Reg at min cost was
- 0.998 0.051 -0.029 0.001;
- 0.033 -0.088 0.996 0.440;
- 0.049 -0.995 -0.089 -0.015;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat, type = 14
- Original Reg
- 0.998 0.049 -0.031 -0.138;
- 0.035 -0.088 0.996 0.441;
- 0.046 -0.995 -0.089 0.053;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- 0.000 -0.002 -0.002 -0.139;
- 0.002 -0.000 -0.000 0.001;
- -0.002 -0.000 -0.000 0.068;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 0.215691
- Computing change in rh position
- Surface RMS Diff (mm) 0.196734 0.385326
- mri_segreg done
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.lta
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- ---- Input registration matrix --------
- 0.998 0.051 -0.029 0.001;
- 0.033 -0.088 0.996 0.440;
- 0.049 -0.995 -0.089 -0.015;
- 0.000 0.000 0.000 1.000;
- float2int = 0
- ---------------------------------------
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz
- Tmov: --------------------
- -0.700 0.000 0.000 95.890;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- ---- Input registration matrix --------
- 0.998 0.051 -0.029 0.001;
- 0.033 -0.088 0.996 0.440;
- 0.049 -0.995 -0.089 -0.015;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub020
- RegMat ---------------------------
- 0.998 0.051 -0.029 0.001;
- 0.033 -0.088 0.996 0.440;
- 0.049 -0.995 -0.089 -0.015;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 1.000 -0.001 -0.001 -0.001;
- 0.001 1.000 0.002 0.066;
- 0.001 -0.002 1.000 -0.380;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 0.699 0.032 -0.022 30.355;
- -0.020 -0.060 -0.664 270.085;
- -0.036 0.663 -0.058 16.840;
- 0.000 0.000 0.000 1.000;
- Cleaning up
-
- Started at Thu Aug 8 22:15:45 CEST 2013
- Ended at Thu Aug 8 22:28:45 CEST 2013
- BBR-Run-Time-Sec 780
-
- bbregister Done
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --surf
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