Logfile for bbregister Thu Aug 8 22:15:45 CEST 2013 setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts /opt/freesurfer/5.3.0/bin/bbregister --s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.lta --init-fsl --T2 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux FREESURFER_HOME /opt/freesurfer/5.3.0 mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.998287, -0.0504193, 0.0296894) j_ras = (-0.0475266, 0.9947, 0.0911741) k_ras = (0.034129, -0.0896069, 0.995392) writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii... fslregister --s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister --dof 6 --fsvol brainmask.mgz Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fslregister.log Thu Aug 8 22:15:50 CEST 2013 --s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister --dof 6 --fsvol brainmask.mgz $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $ snake6 Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux nIters 1 -------------------------------------- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 6.98492e-09, -3.72529e-09) j_ras = (3.72529e-09, 0, -1) k_ras = (-1.00117e-08, 1, 7.45058e-09) writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii... -------------------------------------- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii --frame 0 mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.998287, -0.0504193, 0.0296894) j_ras = (-0.0475266, 0.9947, 0.0911741) k_ras = (0.034129, -0.0896069, 0.995392) keeping frame 0 writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii... Mov determinant is -0.311079 /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/reg0.19121.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat0 --s sub020 --noedit tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/reg0.19121.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii Tmov: -------------------- -0.700 0.000 0.000 95.890; 0.000 0.000 0.667 -128.000; 0.000 -0.667 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 0.998 0.050 -0.030 -0.000; 0.034 -0.090 0.995 0.000; 0.048 -0.995 -0.091 0.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.998 0.050 -0.030 -0.000; 0.034 -0.090 0.995 0.000; 0.048 -0.995 -0.091 0.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = sub020 RegMat --------------------------- 0.998 0.050 -0.030 -0.000; 0.034 -0.090 0.995 0.000; 0.048 -0.995 -0.091 0.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -0.311079, ref det = -1 Thu Aug 8 22:15:58 CEST 2013 /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat0 Thu Aug 8 22:20:31 CEST 2013 /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s sub020 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat.fsl.mat --noedit tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl ---- FSL registration matrix -------- 0.998 0.048 -0.033 30.393; -0.029 -0.091 -0.995 271.146; -0.050 0.995 -0.090 16.219; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii Tmov: -------------------- -0.700 0.000 0.000 95.890; 0.000 0.000 0.667 -128.000; 0.000 -0.667 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -0.311079, ref det = -1 ---- Input registration matrix (computed) -------- 0.998 0.050 -0.029 -0.026; 0.033 -0.090 0.995 1.239; 0.048 -0.995 -0.091 -0.881; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.998 0.050 -0.029 -0.026; 0.033 -0.090 0.995 1.239; 0.048 -0.995 -0.091 -0.881; 0.000 0.000 0.000 1.000; Determinant 1 subject = sub020 RegMat --------------------------- 0.998 0.050 -0.029 -0.026; 0.033 -0.090 0.995 1.239; 0.048 -0.995 -0.091 -0.881; 0.000 0.000 0.000 1.000; Started at Thu Aug 8 22:15:50 CEST 2013 Ended at Thu Aug 8 22:26:43 CEST 2013 fslregister Done To check results, run: tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --surf orig mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname snake6 machine x86_64 user fkaule movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.init.dat subject sub020 dof 6 outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1376959936 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.998 0.050 -0.029 -0.026; 0.033 -0.090 0.995 1.239; 0.048 -0.995 -0.091 -0.881; 0.000 0.000 0.000 1.000; Loading mov Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.009564 1 -25.0 -25.0 25.0 0.989784 2 -25.0 25.0 -25.0 0.998370 3 -25.0 25.0 25.0 1.044732 4 25.0 -25.0 -25.0 1.015749 5 25.0 -25.0 25.0 1.018151 6 25.0 25.0 -25.0 1.020733 7 25.0 25.0 25.0 1.002708 REL: 8 0.289753 8.099791 1.012474 rel = 0.286183 Initial costs ---------------- Number of surface hits 2561 WM Intensity 52.3774 +/- 7.4491 Ctx Intensity 63.9203 +/- 10.2015 Pct Contrast 19.3608 +/- 18.6507 Cost 0.2898 RelCost 0.2862 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9893 0.9893 0.0 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.9767 0.9767 0.0 6 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 -4.0000 0.9609 0.9609 0.0 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.8787 0.8787 0.0 21 -4.0000 -4.0000 -4.0000 4.0000 0.0000 -4.0000 0.8564 0.8564 0.0 39 -4.0000 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.8233 0.8233 0.0 102 -4.0000 0.0000 -4.0000 4.0000 0.0000 -4.0000 0.7725 0.7725 0.0 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.6807 0.6807 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2898 0.2898 0.0 Brute Force -------------------------- Min cost was 0.289753 Number of iterations 729 Search time 3.750000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 9 -0.090 0.000 0.000 0.000 0.000 0.000 0.2897133289 10 -0.047 0.000 0.000 0.000 0.000 0.000 0.2896632757 11 -0.052 0.000 0.000 0.000 0.000 0.000 0.2896421440 12 -0.065 0.000 0.000 0.000 0.000 0.000 0.2895030126 13 -0.075 0.000 0.000 0.000 0.000 0.000 0.2894471780 19 -0.075 -1.618 0.000 0.000 0.000 0.000 0.2674030719 20 -0.075 -0.895 0.000 0.000 0.000 0.000 0.2215231083 25 -0.075 -0.765 0.000 0.000 0.000 0.000 0.2195910650 26 -0.075 -0.782 0.000 0.000 0.000 0.000 0.2188661467 28 -0.075 -0.795 0.000 0.000 0.000 0.000 0.2186373520 33 -0.075 -0.795 1.000 0.000 0.000 0.000 0.1197352454 39 -0.075 -0.795 0.984 0.000 0.000 0.000 0.1197116263 42 -0.075 -0.795 0.985 0.000 0.000 0.000 0.1197115578 49 -0.075 -0.795 0.985 0.006 0.000 0.000 0.1194757737 50 -0.075 -0.795 0.985 0.073 0.000 0.000 0.1185802749 52 -0.075 -0.795 0.985 0.056 0.000 0.000 0.1183779642 54 -0.075 -0.795 0.985 0.057 0.000 0.000 0.1183773232 64 -0.075 -0.795 0.985 0.057 0.025 0.000 0.1182287058 65 -0.075 -0.795 0.985 0.057 0.021 0.000 0.1182084040 66 -0.075 -0.795 0.985 0.057 0.018 0.000 0.1182066430 68 -0.075 -0.795 0.985 0.057 0.019 0.000 0.1182064247 75 -0.075 -0.795 0.985 0.057 0.019 0.042 0.1162862375 76 -0.075 -0.795 0.985 0.057 0.019 0.140 0.1159126150 78 -0.075 -0.795 0.985 0.057 0.019 0.124 0.1157646068 79 -0.075 -0.795 0.985 0.057 0.019 0.103 0.1155614615 81 -0.075 -0.795 0.985 0.057 0.019 0.095 0.1155392746 83 -0.075 -0.795 0.985 0.057 0.019 0.096 0.1155390716 85 -0.075 -0.795 0.985 0.057 0.019 0.097 0.1155390022 95 -0.055 -0.795 0.985 0.057 0.019 0.097 0.1152808532 97 -0.053 -0.795 0.985 0.057 0.019 0.097 0.1152789001 105 -0.053 -0.814 0.985 0.057 0.019 0.097 0.1144369243 108 -0.053 -0.834 0.985 0.057 0.019 0.097 0.1141406839 110 -0.053 -0.833 0.985 0.057 0.019 0.097 0.1141394298 119 -0.053 -0.833 0.970 0.057 0.019 0.097 0.1140526486 121 -0.053 -0.833 0.971 0.057 0.019 0.097 0.1140517714 140 -0.053 -0.833 0.971 0.057 0.034 0.097 0.1138511865 141 -0.053 -0.833 0.971 0.057 0.037 0.097 0.1138506507 142 -0.053 -0.833 0.971 0.057 0.038 0.097 0.1138499119 144 -0.053 -0.833 0.971 0.057 0.041 0.097 0.1138485458 146 -0.053 -0.833 0.971 0.057 0.040 0.097 0.1138483746 155 -0.053 -0.833 0.971 0.057 0.040 0.123 0.1135440152 156 -0.053 -0.833 0.971 0.057 0.040 0.124 0.1135424953 157 -0.053 -0.833 0.971 0.057 0.040 0.126 0.1135406260 160 -0.053 -0.833 0.971 0.057 0.040 0.127 0.1135396864 171 -0.054 -0.833 0.971 0.057 0.040 0.127 0.1135367739 172 -0.056 -0.833 0.971 0.057 0.040 0.127 0.1135355177 183 -0.056 -0.831 0.971 0.057 0.040 0.127 0.1135331747 194 -0.056 -0.831 0.980 0.057 0.040 0.127 0.1135007806 196 -0.056 -0.831 0.979 0.057 0.040 0.127 0.1134999047 207 -0.056 -0.831 0.979 0.059 0.040 0.127 0.1134947058 216 -0.056 -0.831 0.979 0.059 0.045 0.127 0.1134266010 217 -0.056 -0.831 0.979 0.059 0.049 0.127 0.1134182977 229 -0.056 -0.831 0.979 0.059 0.049 0.133 0.1134129142 231 -0.056 -0.831 0.979 0.059 0.049 0.131 0.1134106662 239 -0.057 -0.830 0.982 0.060 0.052 0.132 0.1133981122 240 -0.057 -0.830 0.982 0.060 0.053 0.132 0.1133975152 242 -0.057 -0.830 0.982 0.060 0.053 0.132 0.1133972942 255 -0.063 -0.830 0.982 0.060 0.053 0.132 0.1133716336 275 -0.063 -0.830 0.978 0.060 0.053 0.132 0.1133716322 276 -0.063 -0.830 0.977 0.060 0.053 0.132 0.1133696908 277 -0.063 -0.830 0.976 0.060 0.053 0.132 0.1133684141 287 -0.063 -0.830 0.976 0.064 0.053 0.132 0.1133547938 292 -0.063 -0.830 0.976 0.065 0.053 0.132 0.1133540618 303 -0.063 -0.830 0.976 0.065 0.053 0.128 0.1133421952 304 -0.063 -0.830 0.976 0.065 0.053 0.127 0.1133421643 311 -0.064 -0.829 0.979 0.066 0.056 0.128 0.1133410216 312 -0.063 -0.829 0.977 0.066 0.055 0.128 0.1133394997 314 -0.063 -0.829 0.977 0.066 0.054 0.127 0.1133391143 320 -0.063 -0.829 0.977 0.066 0.054 0.127 0.1133390818 322 -0.063 -0.829 0.977 0.066 0.054 0.127 0.1133389740 323 -0.071 -0.828 0.975 0.072 0.059 0.124 0.1133331825 332 -0.067 -0.829 0.977 0.066 0.054 0.127 0.1133313437 342 -0.067 -0.827 0.977 0.066 0.054 0.127 0.1133297356 343 -0.067 -0.826 0.977 0.066 0.054 0.127 0.1133294073 351 -0.067 -0.826 0.969 0.066 0.054 0.127 0.1133195191 353 -0.067 -0.826 0.971 0.066 0.054 0.127 0.1133186516 377 -0.067 -0.826 0.971 0.066 0.054 0.124 0.1133117106 385 -0.068 -0.825 0.974 0.066 0.057 0.125 0.1133066911 387 -0.068 -0.825 0.974 0.066 0.057 0.125 0.1133065548 391 -0.068 -0.825 0.974 0.067 0.058 0.125 0.1133065333 392 -0.068 -0.825 0.974 0.066 0.058 0.125 0.1133065138 394 -0.068 -0.825 0.974 0.066 0.058 0.125 0.1133063039 396 -0.072 -0.821 0.972 0.067 0.061 0.123 0.1132722121 399 -0.080 -0.815 0.967 0.069 0.067 0.120 0.1132554500 400 -0.079 -0.816 0.968 0.068 0.066 0.121 0.1132532188 403 -0.078 -0.817 0.968 0.068 0.065 0.121 0.1132528868 404 -0.078 -0.817 0.968 0.068 0.065 0.121 0.1132528844 407 -0.078 -0.817 0.968 0.068 0.065 0.121 0.1132528798 412 -0.078 -0.817 0.968 0.068 0.065 0.121 0.1132528550 422 -0.083 -0.817 0.968 0.068 0.065 0.121 0.1132362651 431 -0.083 -0.818 0.968 0.068 0.065 0.121 0.1132294246 434 -0.083 -0.820 0.968 0.068 0.065 0.121 0.1132255578 443 -0.083 -0.820 0.968 0.068 0.065 0.120 0.1132235906 445 -0.082 -0.821 0.967 0.068 0.064 0.120 0.1132229610 448 -0.082 -0.821 0.967 0.068 0.064 0.120 0.1132228962 449 -0.082 -0.821 0.967 0.068 0.064 0.120 0.1132227859 461 -0.082 -0.821 0.967 0.074 0.064 0.120 0.1132118212 462 -0.082 -0.821 0.967 0.072 0.064 0.120 0.1132091714 474 -0.082 -0.821 0.967 0.072 0.064 0.119 0.1132053249 475 -0.082 -0.821 0.967 0.072 0.064 0.118 0.1132047668 478 -0.087 -0.817 0.964 0.073 0.068 0.116 0.1131824348 479 -0.095 -0.810 0.960 0.074 0.073 0.112 0.1131390998 482 -0.099 -0.807 0.958 0.075 0.077 0.110 0.1131119494 483 -0.102 -0.804 0.956 0.075 0.079 0.109 0.1131074225 499 -0.104 -0.804 0.956 0.075 0.079 0.109 0.1131014052 501 -0.105 -0.804 0.956 0.075 0.079 0.109 0.1131005014 511 -0.105 -0.808 0.956 0.075 0.079 0.109 0.1130846651 519 -0.106 -0.807 0.959 0.076 0.083 0.110 0.1130699390 536 -0.106 -0.807 0.959 0.084 0.083 0.110 0.1128816484 537 -0.106 -0.807 0.959 0.089 0.083 0.110 0.1128751056 538 -0.106 -0.807 0.959 0.087 0.083 0.110 0.1128676517 548 -0.106 -0.807 0.959 0.087 0.083 0.115 0.1128662636 549 -0.106 -0.807 0.959 0.087 0.083 0.113 0.1128602595 552 -0.110 -0.803 0.957 0.088 0.086 0.111 0.1128305572 557 -0.111 -0.803 0.956 0.088 0.087 0.111 0.1128294968 576 -0.108 -0.803 0.956 0.088 0.087 0.111 0.1128222835 587 -0.108 -0.805 0.956 0.088 0.087 0.111 0.1128171444 594 -0.107 -0.806 0.951 0.087 0.081 0.109 0.1127732266 595 -0.106 -0.807 0.948 0.086 0.078 0.107 0.1127692540 596 -0.106 -0.807 0.949 0.086 0.079 0.108 0.1127680820 611 -0.106 -0.807 0.949 0.088 0.079 0.108 0.1127574404 612 -0.106 -0.807 0.949 0.090 0.079 0.108 0.1127530221 623 -0.106 -0.807 0.949 0.090 0.079 0.109 0.1127478686 625 -0.106 -0.807 0.949 0.090 0.079 0.110 0.1127474919 627 -0.111 -0.803 0.947 0.090 0.082 0.108 0.1127104249 630 -0.114 -0.800 0.945 0.091 0.084 0.107 0.1127071319 632 -0.113 -0.801 0.945 0.091 0.084 0.107 0.1127064769 639 -0.113 -0.801 0.945 0.091 0.084 0.107 0.1127064125 642 -0.114 -0.799 0.935 0.094 0.081 0.104 0.1126431123 649 -0.115 -0.799 0.933 0.094 0.080 0.104 0.1126413567 652 -0.115 -0.799 0.933 0.094 0.080 0.104 0.1126413171 653 -0.115 -0.799 0.933 0.094 0.080 0.104 0.1126412457 655 -0.115 -0.799 0.933 0.094 0.080 0.104 0.1126411918 664 -0.113 -0.799 0.933 0.094 0.080 0.104 0.1126299976 667 -0.109 -0.799 0.933 0.094 0.080 0.104 0.1126176033 678 -0.109 -0.802 0.933 0.094 0.080 0.104 0.1126136576 679 -0.109 -0.801 0.933 0.094 0.080 0.104 0.1126133458 712 -0.109 -0.801 0.933 0.094 0.080 0.106 0.1126043608 714 -0.109 -0.801 0.933 0.094 0.080 0.107 0.1126020746 721 -0.109 -0.800 0.932 0.094 0.080 0.107 0.1126014395 722 -0.109 -0.800 0.932 0.094 0.080 0.107 0.1126014007 739 -0.107 -0.800 0.932 0.094 0.080 0.107 0.1125972864 758 -0.108 -0.800 0.932 0.095 0.080 0.107 0.1125966119 759 -0.108 -0.800 0.932 0.095 0.080 0.107 0.1125965534 761 -0.108 -0.800 0.932 0.095 0.080 0.107 0.1125962962 787 -0.108 -0.800 0.932 0.095 0.080 0.108 0.1125932688 789 -0.108 -0.800 0.932 0.095 0.080 0.109 0.1125928915 Powell done niters = 9 Computing relative cost 0 -25.0 -25.0 -25.0 1.020202 1 -25.0 -25.0 25.0 0.986642 2 -25.0 25.0 -25.0 1.020725 3 -25.0 25.0 25.0 0.994088 4 25.0 -25.0 -25.0 0.994992 5 25.0 -25.0 25.0 0.988573 6 25.0 25.0 -25.0 0.989970 7 25.0 25.0 25.0 1.033843 REL: 8 0.112593 8.029034 1.003629 rel = 0.112186 Number of iterations 9 Min cost was 0.112593 Number of FunctionCalls 806 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 2.751000 sec Parameters at optimum (transmm) -0.10783 -0.79971 0.93166 Parameters at optimum (rotdeg) 0.09459 0.08050 0.10862 Final costs ---------------- Number of surface hits 2561 WM Intensity 51.7578 +/- 6.4530 Ctx Intensity 63.4173 +/- 7.4812 Pct Contrast 20.1747 +/- 13.2974 Cost 0.1126 RelCost 0.2862 Reg at min cost was 0.998 0.049 -0.031 -0.138; 0.035 -0.088 0.996 0.441; 0.046 -0.995 -0.089 0.053; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat, type = 14 Original Reg 0.998 0.050 -0.029 -0.026; 0.033 -0.090 0.995 1.239; 0.048 -0.995 -0.091 -0.881; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 0.001 0.002 0.111; -0.002 -0.002 -0.000 0.798; 0.001 0.000 -0.002 -0.934; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 1.369623 Computing change in rh position Surface RMS Diff (mm) 1.306990 1.482164 mri_segreg done mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname snake6 machine x86_64 user fkaule movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat subject sub020 dof 6 outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1376035448 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.998 0.049 -0.031 -0.138; 0.035 -0.088 0.996 0.441; 0.046 -0.995 -0.089 0.053; 0.000 0.000 0.000 1.000; Loading mov Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.013494 1 -25.0 -25.0 25.0 1.006108 2 -25.0 25.0 -25.0 0.997941 3 -25.0 25.0 25.0 1.011419 4 25.0 -25.0 -25.0 1.027242 5 25.0 -25.0 25.0 1.003605 6 25.0 25.0 -25.0 0.984781 7 25.0 25.0 25.0 1.015732 REL: 8 0.129034 8.060323 1.007540 rel = 0.128068 Initial costs ---------------- Number of surface hits 255490 WM Intensity 51.9075 +/- 7.0033 Ctx Intensity 63.3654 +/- 7.6848 Pct Contrast 19.8445 +/- 13.5786 Cost 0.1290 RelCost 0.1281 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1259 0.1259 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1220 0.1220 0.0 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1209 0.1209 0.0 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1187 0.1187 0.0 39 -0.1000 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.1176 0.1176 0.0 103 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.0000 0.1175 0.1175 0.0 120 -0.1000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1158 0.1158 0.0 337 0.0000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.1152 0.1152 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1126 0.1126 0.0 Brute Force -------------------------- Min cost was 0.112593 Number of iterations 729 Search time 3.057000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 0.164 0.000 0.000 0.000 0.000 0.000 0.1275259739 8 0.157 0.000 0.000 0.000 0.000 0.000 0.1275049393 9 0.142 0.000 0.000 0.000 0.000 0.000 0.1274834528 10 0.138 0.000 0.000 0.000 0.000 0.000 0.1274822781 11 0.137 0.000 0.000 0.000 0.000 0.000 0.1274819129 15 0.133 0.000 0.000 0.000 0.000 0.000 0.1274811044 24 0.133 0.005 0.000 0.000 0.000 0.000 0.1274772267 25 0.133 0.007 0.000 0.000 0.000 0.000 0.1274767438 26 0.133 0.008 0.000 0.000 0.000 0.000 0.1274765522 34 0.133 0.008 -0.017 0.000 0.000 0.000 0.1274134958 35 0.133 0.008 -0.037 0.000 0.000 0.000 0.1273929401 36 0.133 0.008 -0.034 0.000 0.000 0.000 0.1273906993 37 0.133 0.008 -0.032 0.000 0.000 0.000 0.1273902753 48 0.133 0.008 -0.032 0.001 0.000 0.000 0.1273900855 56 0.133 0.008 -0.032 0.001 -0.080 0.000 0.1262505055 57 0.133 0.008 -0.032 0.001 -0.134 0.000 0.1262437089 58 0.133 0.008 -0.032 0.001 -0.107 0.000 0.1261645037 60 0.133 0.008 -0.032 0.001 -0.108 0.000 0.1261643550 69 0.133 0.008 -0.032 0.001 -0.108 -0.098 0.1256937495 70 0.133 0.008 -0.032 0.001 -0.108 -0.077 0.1256835779 71 0.133 0.008 -0.032 0.001 -0.108 -0.084 0.1256831582 72 0.133 0.008 -0.032 0.001 -0.108 -0.081 0.1256830059 74 0.133 0.008 -0.032 0.001 -0.108 -0.080 0.1256829118 98 0.133 -0.001 -0.032 0.001 -0.108 -0.080 0.1256736232 100 0.133 -0.003 -0.032 0.001 -0.108 -0.080 0.1256732318 109 0.133 -0.004 -0.033 0.001 -0.108 -0.080 0.1256693110 110 0.133 -0.004 -0.064 0.001 -0.108 -0.080 0.1256062685 112 0.133 -0.004 -0.066 0.001 -0.108 -0.080 0.1256062499 121 0.133 -0.004 -0.066 0.007 -0.108 -0.080 0.1255985866 122 0.133 -0.004 -0.066 0.008 -0.108 -0.080 0.1255984469 131 0.133 -0.004 -0.066 0.008 -0.134 -0.080 0.1255457980 133 0.133 -0.004 -0.066 0.008 -0.130 -0.080 0.1255446129 134 0.133 -0.004 -0.066 0.008 -0.131 -0.080 0.1255444568 142 0.133 -0.004 -0.066 0.008 -0.131 -0.096 0.1255422605 143 0.133 -0.004 -0.066 0.008 -0.131 -0.089 0.1255369565 145 0.133 -0.004 -0.066 0.008 -0.131 -0.090 0.1255369215 157 0.136 -0.004 -0.066 0.008 -0.131 -0.090 0.1255360611 177 0.136 -0.004 -0.064 0.008 -0.131 -0.090 0.1255360562 179 0.136 -0.004 -0.065 0.008 -0.131 -0.090 0.1255358859 188 0.136 -0.004 -0.065 0.011 -0.131 -0.090 0.1255352140 190 0.136 -0.004 -0.065 0.012 -0.131 -0.090 0.1255351838 200 0.136 -0.004 -0.065 0.012 -0.132 -0.090 0.1255348151 211 0.136 -0.004 -0.065 0.012 -0.132 -0.089 0.1255347148 221 0.137 -0.004 -0.065 0.012 -0.132 -0.089 0.1255345964 230 0.137 -0.003 -0.065 0.012 -0.132 -0.089 0.1255344417 231 0.137 -0.002 -0.065 0.012 -0.132 -0.089 0.1255343620 242 0.137 -0.002 -0.067 0.012 -0.132 -0.089 0.1255339338 243 0.137 -0.002 -0.068 0.012 -0.132 -0.089 0.1255339324 253 0.137 -0.002 -0.068 0.013 -0.132 -0.089 0.1255337315 274 0.137 -0.002 -0.068 0.013 -0.132 -0.088 0.1255335548 294 0.137 -0.001 -0.068 0.013 -0.132 -0.088 0.1255335233 334 0.137 -0.001 -0.068 0.013 -0.132 -0.087 0.1255335115 344 0.138 -0.001 -0.068 0.013 -0.132 -0.087 0.1255333964 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 1.013858 1 -25.0 -25.0 25.0 1.005302 2 -25.0 25.0 -25.0 0.998067 3 -25.0 25.0 25.0 1.012334 4 25.0 -25.0 -25.0 1.027999 5 25.0 -25.0 25.0 1.002595 6 25.0 25.0 -25.0 0.985033 7 25.0 25.0 25.0 1.016447 REL: 8 0.125533 8.061634 1.007704 rel = 0.124574 Number of iterations 6 Min cost was 0.125533 Number of FunctionCalls 457 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 57.502000 sec Parameters at optimum (transmm) 0.13841 -0.00092 -0.06751 Parameters at optimum (rotdeg) 0.01267 -0.13233 -0.08668 Final costs ---------------- Number of surface hits 255490 WM Intensity 51.9007 +/- 6.9972 Ctx Intensity 63.3499 +/- 7.6561 Pct Contrast 19.8367 +/- 13.5063 Cost 0.1255 RelCost 0.1281 Reg at min cost was 0.998 0.051 -0.029 0.001; 0.033 -0.088 0.996 0.440; 0.049 -0.995 -0.089 -0.015; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat, type = 14 Original Reg 0.998 0.049 -0.031 -0.138; 0.035 -0.088 0.996 0.441; 0.046 -0.995 -0.089 0.053; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 -0.002 -0.002 -0.139; 0.002 -0.000 -0.000 0.001; -0.002 -0.000 -0.000 0.068; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.215691 Computing change in rh position Surface RMS Diff (mm) 0.196734 0.385326 mri_segreg done tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.lta tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 0.998 0.051 -0.029 0.001; 0.033 -0.088 0.996 0.440; 0.049 -0.995 -0.089 -0.015; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz Tmov: -------------------- -0.700 0.000 0.000 95.890; 0.000 0.000 0.667 -128.000; 0.000 -0.667 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 0.998 0.051 -0.029 0.001; 0.033 -0.088 0.996 0.440; 0.049 -0.995 -0.089 -0.015; 0.000 0.000 0.000 1.000; Determinant 1 subject = sub020 RegMat --------------------------- 0.998 0.051 -0.029 0.001; 0.033 -0.088 0.996 0.440; 0.049 -0.995 -0.089 -0.015; 0.000 0.000 0.000 1.000; transformed matrix: 1.000 -0.001 -0.001 -0.001; 0.001 1.000 0.002 0.066; 0.001 -0.002 1.000 -0.380; 0.000 0.000 0.000 1.000; transformed matrix: 0.699 0.032 -0.022 30.355; -0.020 -0.060 -0.664 270.085; -0.036 0.663 -0.058 16.840; 0.000 0.000 0.000 1.000; Cleaning up Started at Thu Aug 8 22:15:45 CEST 2013 Ended at Thu Aug 8 22:28:45 CEST 2013 BBR-Run-Time-Sec 780 bbregister Done To check results, run: tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --surf