Remove unused data from the pup-pup sessions

README.md

@@ -14,17 +14,15 @@ The `vocalisations` directory provides data in four CSV files:
   after the first recording session.  In `pup_calls.csv`, these bats
   were up to half a year old; in `adult_calls.csv`, the same individuals
   were 2 years old.  The juvenile recordings were acquired with pairs of
-  bats: (deafened or normal-hearing) juveniles and their (always
-  normal-hearing) respective mothers.  The adult recordings were
-  acquired from groups of two or three bats such that within each
+  bats: In each session, one (deafened or normal-hearing) juvenile was
+  paired with its (always normal-hearing) mother.  The adult recordings
+  were acquired from groups of two or three bats such that within each
   recording session, all were either deafened or of normal hearing.
 
   `pup_calls.csv` includes the vocalisations from the juvenile bats’
   respective mothers which were placed in the recording chamber with
-  their offspring in some of the sessions, as well as vocalisations from
-  sessions in which normal-hearing juveniles were paired with deaf
-  juveniles.  Neither of these data have been analysed further by the
-  authors.
+  their offspring in some of the sessions.  These data have not been
+  analysed further by the authors.
 
 * `pup_sessions.csv`, `adult_sessions.csv`: Metadata for the recording
   sessions.

vocalisations/pup_calls.csv

@@ -1 +1 @@
-/annex/objects/MD5-s308030911--99d2bed8ac778abed4536d01ec99b63c
+/annex/objects/MD5-s254296316--d47491376756393a3486e30e77af7448

vocalisations/pup_sessions.csv

@@ -1,13 +1,4 @@
 session_id,animal1,animal2,start_time,before_deafening
-0,b2,b3,2017-09-04 10:36:36,0
-1,b2,b3,2017-08-21 10:07:58,0
-2,b2,b3,2017-08-28 10:24:38,0
-3,b2,b5,2017-09-06 10:06:57,0
-4,b2,b5,2017-08-24 11:20:51,0
-5,b2,b5,2017-08-30 09:48:17,0
-6,b2,b8,2017-09-05 10:03:12,0
-7,b2,b8,2017-08-23 10:15:24,0
-8,b2,b8,2017-08-29 09:58:12,0
 9,b2,mh,2017-08-01 14:21:14,0
 10,b2,mh,2017-03-01 10:41:11,0
 11,b2,mh,2017-03-02 13:08:42,0
@@ -114,15 +105,6 @@ session_id,animal1,animal2,start_time,before_deafening
 112,b3,mt,2017-03-28 10:08:59,0
 113,b3,mt,2017-03-29 10:35:52,0
 114,b3,mt,2017-05-29 10:30:44,0
-115,b4,b3,2017-09-05 10:27:13,0
-116,b4,b3,2017-08-23 10:36:33,0
-117,b4,b3,2017-08-29 10:25:52,0
-118,b4,b5,2017-09-04 11:08:05,0
-119,b4,b5,2017-08-21 10:29:11,0
-120,b4,b5,2017-08-28 10:51:35,0
-121,b4,b8,2017-09-06 10:31:07,0
-122,b4,b8,2017-08-24 12:36:04,0
-123,b4,b8,2017-08-30 10:12:18,0
 124,b4,mb,2017-08-01 15:06:08,0
 125,b4,mb,2017-03-01 11:23:21,0
 126,b4,mb,2017-03-02 13:32:08,0
@@ -231,16 +213,6 @@ session_id,animal1,animal2,start_time,before_deafening
 229,b5,mt,2017-03-28 10:58:48,0
 230,b5,mt,2017-03-29 11:17:57,0
 231,b5,mt,2017-05-29 12:38:32,0
-232,b7,b3,2017-09-06 10:55:05,0
-233,b7,b3,2017-09-06 11:07:41,0
-234,b7,b3,2017-08-24 12:57:24,0
-235,b7,b3,2017-08-30 10:35:41,0
-236,b7,b5,2017-09-05 10:50:27,0
-237,b7,b5,2017-08-23 10:58:00,0
-238,b7,b5,2017-08-29 10:49:54,0
-239,b7,b8,2017-09-04 13:11:03,0
-240,b7,b8,2017-08-21 10:50:58,0
-241,b7,b8,2017-08-28 11:14:30,0
 242,b7,my,2017-08-01 15:59:41,0
 243,b7,my,2017-06-01 09:06:19,0
 244,b7,my,2017-03-01 13:15:36,0

vocalisations/scripts/make_figures.py

@@ -70,10 +70,6 @@ pup_calls["calling_bat_age_in_weeks"] = ages.dt.days // 7
 pup_calls["call_rms"] = pup_calls["call_rms"] + 55
 pup_calls["calling_bat_deaf"] = pup_calls["calling_bat_deaf"] != 0
 
-# exclude sessions without mothers
-pup_calls = pup_calls[~pup_calls["other_bat"].isin(all_pups)]
-pup_sessions = pup_sessions[~pup_sessions["animal2"].isin(all_pups)]
-
 ###
 # Load data for adults