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Remove unused data from the pup-pup sessions

Michael Schutte 3 years ago
parent
commit
becfb33fb6

+ 5 - 7
README.md

@@ -14,17 +14,15 @@ The `vocalisations` directory provides data in four CSV files:
   after the first recording session.  In `pup_calls.csv`, these bats
   after the first recording session.  In `pup_calls.csv`, these bats
   were up to half a year old; in `adult_calls.csv`, the same individuals
   were up to half a year old; in `adult_calls.csv`, the same individuals
   were 2 years old.  The juvenile recordings were acquired with pairs of
   were 2 years old.  The juvenile recordings were acquired with pairs of
-  bats: (deafened or normal-hearing) juveniles and their (always
-  normal-hearing) respective mothers.  The adult recordings were
-  acquired from groups of two or three bats such that within each
+  bats: In each session, one (deafened or normal-hearing) juvenile was
+  paired with its (always normal-hearing) mother.  The adult recordings
+  were acquired from groups of two or three bats such that within each
   recording session, all were either deafened or of normal hearing.
   recording session, all were either deafened or of normal hearing.
 
 
   `pup_calls.csv` includes the vocalisations from the juvenile bats’
   `pup_calls.csv` includes the vocalisations from the juvenile bats’
   respective mothers which were placed in the recording chamber with
   respective mothers which were placed in the recording chamber with
-  their offspring in some of the sessions, as well as vocalisations from
-  sessions in which normal-hearing juveniles were paired with deaf
-  juveniles.  Neither of these data have been analysed further by the
-  authors.
+  their offspring in some of the sessions.  These data have not been
+  analysed further by the authors.
 
 
 * `pup_sessions.csv`, `adult_sessions.csv`: Metadata for the recording
 * `pup_sessions.csv`, `adult_sessions.csv`: Metadata for the recording
   sessions.
   sessions.

+ 1 - 1
vocalisations/pup_calls.csv

@@ -1 +1 @@
-/annex/objects/MD5-s308030911--99d2bed8ac778abed4536d01ec99b63c
+/annex/objects/MD5-s254296316--d47491376756393a3486e30e77af7448

+ 0 - 28
vocalisations/pup_sessions.csv

@@ -1,13 +1,4 @@
 session_id,animal1,animal2,start_time,before_deafening
 session_id,animal1,animal2,start_time,before_deafening
-0,b2,b3,2017-09-04 10:36:36,0
-1,b2,b3,2017-08-21 10:07:58,0
-2,b2,b3,2017-08-28 10:24:38,0
-3,b2,b5,2017-09-06 10:06:57,0
-4,b2,b5,2017-08-24 11:20:51,0
-5,b2,b5,2017-08-30 09:48:17,0
-6,b2,b8,2017-09-05 10:03:12,0
-7,b2,b8,2017-08-23 10:15:24,0
-8,b2,b8,2017-08-29 09:58:12,0
 9,b2,mh,2017-08-01 14:21:14,0
 9,b2,mh,2017-08-01 14:21:14,0
 10,b2,mh,2017-03-01 10:41:11,0
 10,b2,mh,2017-03-01 10:41:11,0
 11,b2,mh,2017-03-02 13:08:42,0
 11,b2,mh,2017-03-02 13:08:42,0
@@ -114,15 +105,6 @@ session_id,animal1,animal2,start_time,before_deafening
 112,b3,mt,2017-03-28 10:08:59,0
 112,b3,mt,2017-03-28 10:08:59,0
 113,b3,mt,2017-03-29 10:35:52,0
 113,b3,mt,2017-03-29 10:35:52,0
 114,b3,mt,2017-05-29 10:30:44,0
 114,b3,mt,2017-05-29 10:30:44,0
-115,b4,b3,2017-09-05 10:27:13,0
-116,b4,b3,2017-08-23 10:36:33,0
-117,b4,b3,2017-08-29 10:25:52,0
-118,b4,b5,2017-09-04 11:08:05,0
-119,b4,b5,2017-08-21 10:29:11,0
-120,b4,b5,2017-08-28 10:51:35,0
-121,b4,b8,2017-09-06 10:31:07,0
-122,b4,b8,2017-08-24 12:36:04,0
-123,b4,b8,2017-08-30 10:12:18,0
 124,b4,mb,2017-08-01 15:06:08,0
 124,b4,mb,2017-08-01 15:06:08,0
 125,b4,mb,2017-03-01 11:23:21,0
 125,b4,mb,2017-03-01 11:23:21,0
 126,b4,mb,2017-03-02 13:32:08,0
 126,b4,mb,2017-03-02 13:32:08,0
@@ -231,16 +213,6 @@ session_id,animal1,animal2,start_time,before_deafening
 229,b5,mt,2017-03-28 10:58:48,0
 229,b5,mt,2017-03-28 10:58:48,0
 230,b5,mt,2017-03-29 11:17:57,0
 230,b5,mt,2017-03-29 11:17:57,0
 231,b5,mt,2017-05-29 12:38:32,0
 231,b5,mt,2017-05-29 12:38:32,0
-232,b7,b3,2017-09-06 10:55:05,0
-233,b7,b3,2017-09-06 11:07:41,0
-234,b7,b3,2017-08-24 12:57:24,0
-235,b7,b3,2017-08-30 10:35:41,0
-236,b7,b5,2017-09-05 10:50:27,0
-237,b7,b5,2017-08-23 10:58:00,0
-238,b7,b5,2017-08-29 10:49:54,0
-239,b7,b8,2017-09-04 13:11:03,0
-240,b7,b8,2017-08-21 10:50:58,0
-241,b7,b8,2017-08-28 11:14:30,0
 242,b7,my,2017-08-01 15:59:41,0
 242,b7,my,2017-08-01 15:59:41,0
 243,b7,my,2017-06-01 09:06:19,0
 243,b7,my,2017-06-01 09:06:19,0
 244,b7,my,2017-03-01 13:15:36,0
 244,b7,my,2017-03-01 13:15:36,0

+ 0 - 4
vocalisations/scripts/make_figures.py

@@ -70,10 +70,6 @@ pup_calls["calling_bat_age_in_weeks"] = ages.dt.days // 7
 pup_calls["call_rms"] = pup_calls["call_rms"] + 55
 pup_calls["call_rms"] = pup_calls["call_rms"] + 55
 pup_calls["calling_bat_deaf"] = pup_calls["calling_bat_deaf"] != 0
 pup_calls["calling_bat_deaf"] = pup_calls["calling_bat_deaf"] != 0
 
 
-# exclude sessions without mothers
-pup_calls = pup_calls[~pup_calls["other_bat"].isin(all_pups)]
-pup_sessions = pup_sessions[~pup_sessions["animal2"].isin(all_pups)]
-
 ###
 ###
 # Load data for adults
 # Load data for adults