Longitudinal MRI (T2-weighted and rs-fMRI) of GFAP-/-/Vim-/- and WT mice

Markus Aswendt d3f7e02992 Add information for publishing with DataCite 4 jaren geleden
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README.md

GFAP_PT_4wks

Longitudinal MRI (T2-weighted and rs-fMRI) of GFAP-/-/Vim-/- and WT mice; 6 time points over 4 weeks post photothrombotic stroke.

Files:

  • MRI_raw_data - contains all raw data in Bruker 2dseq format and the original Bruker folder structure
  • MRI_proc_data - contains all data processed with the AIDAmri pipeline. Processing steps: define stroke masks, convert Bruker to NIfTI-1 data format, image re-orientation, bias-field correction, brain extraction, region-of-interest segmentation, registration with the Allen Mouse Brain Atlas (CCFv3), functional connectivity analysis.

Authors:

Markus Aswendt, Ulrika Wilhelmsson, Frederique Wieters, Felix Schmitt, Niklas Pallast, Yolanda de Pablo, Lava Mohammed, Mathias Hoehn, Marcela Pekna, Milos Pekny

datacite.yml
Title Longitudinal MRI (T2-weighted and rs-fMRI) of GFAP-/-/Vim-/- and WT mice
Authors Aswendt,Markus;University of Cologne;ORCID:0000-0003-1423-0934
Wilhelmsson,Ulrika;University of Gothenburg;ORCID:0000-0003-3227-2687
Wieters,Frederique;University of Cologne
Schmitt,Felix;University of Cologne
Pallast,Niklas;University of Cologne
de Pablo,Yolanda;University of Gothenburg;ORCID:0000-0001-5208-2114
Mohammed,Lava;University of Gothenburg
Hoehn,Mathias;Forschungszentrum Jülich;ORCID:0000-0001-5996-7572
Pekna,Marcela;University of Gothenburg;ORCID:0000-0003-2734-8237
Pekny,Milos;University of Gothenburg;ORCID:0000-0003-1607-8075
,
Description Longitudinal MRI (T2-weighted and rs-fMRI) of GFAP-/-/Vim-/- and WT mice; 6 time points over 4 weeks post photothrombotic stroke.
License Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International Public License (https://creativecommons.org/licenses/by-nc-sa/4.0/)
References
Funding
Keywords Neuroscience
Stroke
Stroke recovery
Photothrombose
Reactive Gliosis
Astrocyte
MRI
Functional connectivit
Network analysis
Graph theory
Resource Type Dataset