Shield: [![CC BY-NC-SA 4.0][cc-by-nc-sa-shield]][cc-by-nc-sa]
This work is licensed under a [Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License][cc-by-nc-sa].
[![CC BY-NC-SA 4.0][cc-by-nc-sa-image]][cc-by-nc-sa]
[cc-by-nc-sa]: http://creativecommons.org/licenses/by-nc-sa/4.0/
[cc-by-nc-sa-image]: https://licensebuttons.net/l/by-nc-sa/4.0/88x31.png
[cc-by-nc-sa-shield]: https://img.shields.io/badge/License-CC%20BY--NC--SA%204.0-lightgrey.svg
Description of data
Validation data provided here was used to generate figures for 'OPETH: Open Source Solution for Real-time Peri-event Time Histogram Based on Open Ephys' by András Széll, Sergio Martínez-Bellver, Panna Hegedüs and Balázs Hangya, depositied on bioRxiv:
https://www.biorxiv.org/content/10.1101/783688v1
The experimental data is provided in Cellbase format. CellBase software is a Matlab-based, open source data handling and analysis tool, and available at
https://github.com/hangyabalazs/CellBase
See CellBase documentation for details on variable structure.
The Behaviour/ folder contains tetrode recordings in a behavioural recording sesssion:
event.mat contains TTL event timestamps.
TT1.mat, TT2.mat,... contains spike data from each tetrode.
TT1_1.mat,... contains spike data after spike sorting in MClust (A.D.Redish).
DBO07_190826a.mat contains raw behavioural data.
TrialEvents.mat contains Trial events structure (see CellBase).
StimEvents.mat contains Stimulus events structure (see CellBase).
EVENTSPIKES and STIMSPIKES files contain pre-aligned spike times (see CellBase).
The Tagging/ folders contain tetrode recordings in optogenetic tagging sesssions in the same format.
Please note that CellBase code relies on this particular folder structure (see CellBase documentation.)
--- oo ---
Description of code
lightpsth.m is included, which was used to calculated light-triggered PETH for unsorted tetrode data offline. All other code, including offline PETH tools for sorted data are part of MClust 3.5 (A.D Redish) or CellBase software packagages, available online.
