We use cookies to ensure you get the best experience on our website
Página inicial Explorar Ajuda News
Registrar Entrar
hangyabalazs
/
OPETH_validation_data
1
0
Fork 0
Arquivos Issues 0 Pull Requests 0 Wiki
Tree: 44fa1bf279
Branches Tags
OPETH_valida...
/
readme.txt

readme.txt 2.1 KB
Histórico Download

123456789101112131415161718192021222324252627282930313233343536 
  1. Shield: [![CC BY-NC-SA 4.0][cc-by-nc-sa-shield]][cc-by-nc-sa]
    2. 

  2. 

  3. This work is licensed under a [Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License][cc-by-nc-sa].
    4. 

  4. 

  5. [![CC BY-NC-SA 4.0][cc-by-nc-sa-image]][cc-by-nc-sa]
    6. 

  6. 

  7. [cc-by-nc-sa]: http://creativecommons.org/licenses/by-nc-sa/4.0/
    8. 

  8. [cc-by-nc-sa-image]: https://licensebuttons.net/l/by-nc-sa/4.0/88x31.png
    9. 

  9. [cc-by-nc-sa-shield]: https://img.shields.io/badge/License-CC%20BY--NC--SA%204.0-lightgrey.svg
    10. 

  10. 

  11. 

  12. Description of data
    13. 

  13. 

  14. Validation data provided here was used to generate figures for 'OPETH: Open Source Solution for Real-time Peri-event Time Histogram Based on Open Ephys' by András Széll, Sergio Martínez-Bellver, Panna Hegedüs and Balázs Hangya, depositied on bioRxiv:
    15. 

  15. https://www.biorxiv.org/content/10.1101/783688v1
    16. 

  16. 

  17. The experimental data is provided in Cellbase format. CellBase software is a Matlab-based, open source data handling and analysis tool, and available at
    18. 

  18. https://github.com/hangyabalazs/CellBase
    19. 

  19. See CellBase documentation for details on variable structure.
    20. 

  20. 

  21. The Behaviour/<sessionID> folder contains tetrode recordings in a behavioural recording sesssion:
    22. 

  22. event.mat contains TTL event timestamps.
    23. 

  23. TT1.mat, TT2.mat,... contains spike data from each tetrode.
    24. 

  24. TT1_1.mat,... contains spike data after spike sorting in MClust (A.D.Redish).
    25. 

  25. DBO07_190826a.mat contains raw behavioural data.
    26. 

  26. TrialEvents.mat contains Trial events structure (see CellBase).
    27. 

  27. StimEvents.mat contains Stimulus events structure (see CellBase).
    28. 

  28. EVENTSPIKES and STIMSPIKES files contain pre-aligned spike times (see CellBase).
    29. 

  29. The Tagging/<sessionID> folders contain tetrode recordings in optogenetic tagging sesssions in the same format.
    30. 

  30. Please note that CellBase code relies on this particular folder structure (see CellBase documentation.)
    31. 

  31. 

  32. --- oo ---
    33. 

  33. 

  34. Description of code
    35. 

  35. 

  36. lightpsth.m is included, which was used to calculated light-triggered PETH for unsorted tetrode data offline. All other code, including offline PETH tools for sorted data are part of MClust 3.5 (A.D Redish) or CellBase software packagages, available online.
    37.