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doi
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GFAP_PT_4wks
forked from Aswendt_Lab/2021_Aswendt_GFAP_PT_4wks
DOI
10.12751/g-node.yzjhz3
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GFAP_PT_4wks
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MRI_proc_data
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P7
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GFAP_Vim
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GV_T3_1_1_1_4_20181126_102413
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fMRI
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regr
/
regress.log

regress.log 20 KB
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  1. fslroi /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/rs-fMRI_niiData/GV_T3_1_1_1_4_20181126_102413_mcf_fslScaleTemp.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/rs-fMRI_niiData/GV_T3_1_1_1_4_20181126_102413_mcf_f.nii.gz 5 -1
    2. 

  2. fslsplit /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/rs-fMRI_niiData/GV_T3_1_1_1_4_20181126_102413_mcf_f_fslScaleTemp.nii.gz GV_T3_1_1_1_4_20181126_102413_mcf_f -z
    3. 

  3. Start separate slice Regression ... 
    4. 

  4. For all Sices ...
    5. 

  5. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0000.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0000.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0000.txt -f '1,2,7,9,11,12,13'
    6. 

  6. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0001.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0001.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0001.txt -f '1,2,7,9,11,12,13'
    7. 

  7. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0002.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0002.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0002.txt -f '1,2,7,9,11,12,13'
    8. 

  8. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0003.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0003.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0003.txt -f '1,2,7,9,11,12,13'
    9. 

  9. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0004.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0004.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0004.txt -f '1,2,7,9,11,12,13'
    10. 

  10. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0005.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0005.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0005.txt -f '1,2,7,9,11,12,13'
    11. 

  11. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0006.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0006.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0006.txt -f '1,2,7,9,11,12,13'
    12. 

  12. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0007.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0007.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0007.txt -f '1,2,7,9,11,12,13'
    13. 

  13. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0008.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0008.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0008.txt -f '1,2,7,9,11,12,13'
    14. 

  14. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0009.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0009.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0009.txt -f '1,2,7,9,11,12,13'
    15. 

  15. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0010.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0010.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0010.txt -f '1,2,7,9,11,12,13'
    16. 

  16. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0011.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0011.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0011.txt -f '1,2,7,9,11,12,13'
    17. 

  17. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0012.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0012.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0012.txt -f '1,2,7,9,11,12,13'
    18. 

  18. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0013.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0013.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0013.txt -f '1,2,7,9,11,12,13'
    19. 

  19. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0014.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0014.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0014.txt -f '1,2,7,9,11,12,13'
    20. 

  20. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0015.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0015.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0015.txt -f '1,2,7,9,11,12,13'
    21. 

  21. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0016.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0016.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0016.txt -f '1,2,7,9,11,12,13'
    22. 

  22. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0017.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0017.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0017.txt -f '1,2,7,9,11,12,13'
    23. 

  23. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0018.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0018.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0018.txt -f '1,2,7,9,11,12,13'
    24. 

  24. fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0019.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0019.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0019.txt -f '1,2,7,9,11,12,13'
    25. 

  25. fslmerge -z /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0000.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0001.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0002.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0003.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0004.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0005.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0006.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0007.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0008.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0009.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0010.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0011.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0012.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0013.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0014.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0015.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0016.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0017.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0018.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0019.nii.gz
    26. 

  26. fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz -Tmean /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean2.nii.gz
    27. 

  27. bet /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean2_fslScaleTemp.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean2Bet.nii.gz -f 0.35 -m -r 45 -R -g 0.10
    28. 

  28. fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz -mas /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean2Bet_mask.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz
    29. 

  29. fslstats /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz -p 98
    30. 

  30. fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz -thr 113.0723511000 -Tmin -bin /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz -odt char
    31. 

  31. fslstats /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz  -k /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz -p 50  
    32. 

  32. fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz -dilF /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz
    33. 

  33. fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz -mas /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGRthres.nii.gz
    34. 

  34. fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGRthres.nii.gz -Tmean /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean_func.nii.gz
    35. 

  35. susan /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGRthres_fslScaleTemp.nii.gz 620.8248592500 1.2739827004 2 1 1 /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean_func_fslScaleTemp.nii.gz 620.8248592500 /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR.nii.gz
    36. 

  36. fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR.nii.gz -mas /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR_smooth.nii.gz
    37. 

  37. fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR_smooth.nii.gz -mul 16.10760241 /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR_smooth_intnorm.nii.gz
    38. 

  38. fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR_smooth_intnorm.nii.gz -Tmean /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/tempMean.nii.gz
    39. 

  39. fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR_smooth_intnorm.nii.gz -bptf 17.605634 -1.000000 -add /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/tempMean.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SFRGR.nii.gz
    40. 

  40. fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SFRGR.nii.gz -thrp 17.0000000000 -Tmean -bin /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SFRGR_thres_mask.nii.gz -odt float
    41.