fslroi /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/rs-fMRI_niiData/GV_T3_1_1_1_4_20181126_102413_mcf_fslScaleTemp.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/rs-fMRI_niiData/GV_T3_1_1_1_4_20181126_102413_mcf_f.nii.gz 5 -1
fslsplit /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/rs-fMRI_niiData/GV_T3_1_1_1_4_20181126_102413_mcf_f_fslScaleTemp.nii.gz GV_T3_1_1_1_4_20181126_102413_mcf_f -z
Start separate slice Regression ... 
For all Sices ...
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0000.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0000.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0000.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0001.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0001.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0001.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0002.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0002.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0002.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0003.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0003.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0003.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0004.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0004.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0004.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0005.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0005.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0005.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0006.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0006.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0006.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0007.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0007.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0007.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0008.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0008.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0008.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0009.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0009.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0009.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0010.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0010.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0010.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0011.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0011.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0011.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0012.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0012.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0012.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0013.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0013.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0013.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0014.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0014.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0014.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0015.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0015.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0015.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0016.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0016.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0016.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0017.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0017.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0017.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0018.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0018.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0018.txt -f '1,2,7,9,11,12,13'
fsl_regfilt -i /Users/pallastn/ImageProcessing/GIT/AIDAmri/bin/3.3_fMRIActivity/GV_T3_1_1_1_4_20181126_102413_mcf_f0019.nii.gz -o /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0019.nii.gz -d /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/txtRegrPython/GV_T3_1_1_1_4_20181126_102413_mcf_slice_0019.txt -f '1,2,7,9,11,12,13'
fslmerge -z /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0000.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0001.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0002.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0003.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0004.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0005.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0006.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0007.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0008.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0009.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0010.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0011.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0012.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0013.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0014.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0015.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0016.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0017.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0018.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f0019.nii.gz
fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz -Tmean /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean2.nii.gz
bet /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean2_fslScaleTemp.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean2Bet.nii.gz -f 0.35 -m -r 45 -R -g 0.10
fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz -mas /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean2Bet_mask.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz
fslstats /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz -p 98
fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz -thr 113.0723511000 -Tmin -bin /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz -odt char
fslstats /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz  -k /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz -p 50  
fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz -dilF /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz
fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGR.nii.gz -mas /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGRthres.nii.gz
fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGRthres.nii.gz -Tmean /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean_func.nii.gz
susan /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_RGRthres_fslScaleTemp.nii.gz 620.8248592500 1.2739827004 2 1 1 /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mean_func_fslScaleTemp.nii.gz 620.8248592500 /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR.nii.gz
fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR.nii.gz -mas /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/mask.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR_smooth.nii.gz
fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR_smooth.nii.gz -mul 16.10760241 /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR_smooth_intnorm.nii.gz
fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR_smooth_intnorm.nii.gz -Tmean /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/tempMean.nii.gz
fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SRGR_smooth_intnorm.nii.gz -bptf 17.605634 -1.000000 -add /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/tempMean.nii.gz /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SFRGR.nii.gz
fslmaths /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SFRGR.nii.gz -thrp 17.0000000000 -Tmean -bin /Volumes/AG_Aswendt_Projects/TVA_GFAP_Vimentin_Göteborg/MRI/proc_data/P7/GFAP_Vim/GV_T3_1_1_1_4_20181126_102413/fMRI/regr/GV_T3_1_1_1_4_20181126_102413_mcf_f_SFRGR_thres_mask.nii.gz -odt float