AIDAconnect test data

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AIDAconnect test data

Longitudinal MRI (T2-weighted, rs-fMRI and DTI) of mice with cortical stroke and treatment (n=7) or control substance (n=10); 4 time points over 8 weeks post stroke.


  • MRI_raw_data - contains all raw data in Bruker 2dseq format and the original Bruker folder structure
  • MRI_proc_data - contains all data processed with the AIDAmri pipeline. Processing steps: define stroke masks, convert Bruker to NIfTI-1 data format, image re-orientation, bias-field correction, brain extraction, region-of-interest segmentation, registration with the Allen Mouse Brain Atlas (CCFv3), processing for functional and structural connectivity analysis.
  • MRI_proc_data is ready to use for network analysis using AIDAconnect


Markus Aswendt, Niklas Pallast, Olivia Käsgen, Frederique Wieters, Felix Schmitt, Leon Scharwächter.

Data made available through the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International Public License.

Title AIDAconnect test data
Authors Aswendt,Markus;University Hospital Cologne;ORCID:0000-0003-1423-0934
Pallast,Niklas;University Hospital Cologne
Käsgen,Olivia;University Hospital Cologne
Wieters,Frederique;University Hospital Cologne
Schmitt,Felix;University Hospital Cologne
Scharwächter,Leon;University Hospital Cologne
Description Test data for MRI mouse brain network analysis using AIDAconnect
License CC BY-NC-SA 4.0 (
Keywords Neuroscience
Resource Type Dataset