AIDAconnect_test_data/README.md

AIDAconnect test data

Longitudinal MRI (T2-weighted, rs-fMRI and DTI) of mice with cortical stroke and treatment (n=7) or control substance (n=10); 4 time points over 8 weeks post stroke.

Files:

• MRI_raw_data - contains all raw data in Bruker 2dseq format and the original Bruker folder structure
• MRI_proc_data - contains all data processed with the AIDAmri pipeline. Processing steps: define stroke masks, convert Bruker to NIfTI-1 data format, image re-orientation, bias-field correction, brain extraction, region-of-interest segmentation, registration with the Allen Mouse Brain Atlas (CCFv3), processing for functional and structural connectivity analysis.
• MRI_proc_data is ready to use for network analysis using AIDAconnect

Authors:

Markus Aswendt, Niklas Pallast, Olivia Käsgen, Frederique Wieters, Felix Schmitt, Leon Scharwächter.

Data made available through the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International Public License.