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convert2nwbEcephysMatNnx
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Martynas Dervinis fee489f975 Update 'README.md' 1 year ago
nnx_derived_data 90ee60d999 Initial commit 2 years ago
nnx_raw_derived_data 90ee60d999 Initial commit 2 years ago
LICENSE 243f00fd1b Initial commit 2 years ago
README.md fee489f975 Update 'README.md' 1 year ago
cleanUp.m 243f00fd1b Initial commit 2 years ago
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convert2nwb.m 11a4c81f73 Removed electrodes entry from the unit table 2 years ago
nwbAnimalParams.m 1b70242883 Expanded units table 2 years ago
nwbParams.m 1b70242883 Expanded units table 2 years ago
nwbSessionParams.m 97a1b796dc Fixed waveformsMean empty array bug 2 years ago

README.md

convert2nwbEcephysMatNnx

Matlab functions to convert extracellular electrophysiology recordings and associated behavioural data to Neurodata Without Borders (NWB) file format: Neuronexus example.

In order to download this repository, you will have to install GIN client. You can find the installation instructions here.

To download the repository execute the following lines in your command line:

gin get dervinism/convert2nwbEcephysMatNnx
cd convert2nwbEcephysMatNnx
gin get-content

Alternatively, you can download the repository through the web browser. In this case, large files may require to be downloaded individually.

In order to execute the Matlab code, you will also need to download the matnwb repository and add it to your Matlab path.

Once you have downloaded and installed all the required dependencies you can execute convert2nwb script in Matlab. This should convert the example data into NWB format and store it inside the nnx_derived_data_nwb folder. If you want to adapt the code for your own puprposes, have a look at the code and the comments inside Matlab scritps and functions.

Keywords: Neurodata Without Borders; NWB; matnwb; extracellular electrophysiology; ecephys; Neuronexus; silicone probe; extracellular electrode; spiking; FAIR principles; open science.