dervinism/convert2nwbEcephysMatNnx

Scheduled service maintenance on November 22

On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

We apologize for any inconvenience.

Martynas Dervinis fee489f975 Update 'README.md'		преди 1 година
nnx_derived_data	90ee60d999 Initial commit	преди 2 години
nnx_raw_derived_data	90ee60d999 Initial commit	преди 2 години
LICENSE	243f00fd1b Initial commit	преди 2 години
README.md	fee489f975 Update 'README.md'	преди 1 година
cleanUp.m	243f00fd1b Initial commit	преди 2 години
concatenateMat.m	243f00fd1b Initial commit	преди 2 години
convert2nwb.m	11a4c81f73 Removed electrodes entry from the unit table	преди 2 години
nwbAnimalParams.m	1b70242883 Expanded units table	преди 2 години
nwbParams.m	1b70242883 Expanded units table	преди 2 години
nwbSessionParams.m	97a1b796dc Fixed waveformsMean empty array bug	преди 2 години

Martynas Dervinis fee489f975 Update 'README.md'

преди 1 година

nnx_derived_data

90ee60d999 Initial commit

преди 2 години

nnx_raw_derived_data

90ee60d999 Initial commit

преди 2 години

LICENSE

243f00fd1b Initial commit

преди 2 години

README.md

fee489f975 Update 'README.md'

преди 1 година

cleanUp.m

243f00fd1b Initial commit

преди 2 години

concatenateMat.m

243f00fd1b Initial commit

преди 2 години

convert2nwb.m

11a4c81f73 Removed electrodes entry from the unit table

преди 2 години

nwbAnimalParams.m

1b70242883 Expanded units table

преди 2 години

nwbParams.m

1b70242883 Expanded units table

преди 2 години

nwbSessionParams.m

97a1b796dc Fixed waveformsMean empty array bug

преди 2 години

convert2nwbEcephysMatNnx

Matlab functions to convert extracellular electrophysiology recordings and associated behavioural data to Neurodata Without Borders (NWB) file format: Neuronexus example.

In order to download this repository, you will have to install GIN client. You can find the installation instructions here.

To download the repository execute the following lines in your command line:

gin get dervinism/convert2nwbEcephysMatNnx cd convert2nwbEcephysMatNnx gin get-content

Alternatively, you can download the repository through the web browser. In this case, large files may require to be downloaded individually.

In order to execute the Matlab code, you will also need to download the matnwb repository and add it to your Matlab path.

Once you have downloaded and installed all the required dependencies you can execute convert2nwb script in Matlab. This should convert the example data into NWB format and store it inside the nnx_derived_data_nwb folder. If you want to adapt the code for your own puprposes, have a look at the code and the comments inside Matlab scritps and functions.

Keywords: Neurodata Without Borders; NWB; matnwb; extracellular electrophysiology; ecephys; Neuronexus; silicone probe; extracellular electrode; spiking; FAIR principles; open science.