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dotmap scans
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README.md 9e958e5442 'dotmap scans/README.md' ändern há 2 anos atrás

README.md

Dataset Structure

The dotmap scans are provided as .h5 files. They contain the recorded neuronal responses to colored sparse noise stimuli.

The following attributes are present in each individual dataset:

  • dot_x_pos: x position of dot for each trial (from 0 to 7)
    • shape:1 x n_trials
  • dot_y_pos: y position of dot for each trial (from 0 to 4)
    • shape:1 x n_trials
  • cond_trials: dot intensity of green and UV channel for each trial (in 8-bit)
    • shape:1 x n_trials x n_channels
  • pupil_trials: mean pupil size for each trial (not present for scans with pupil dilation)
    • shape:1 x n_trials
  • locomotion_trials: mean locomotion speed for each trial
    • shape:1 x n_trials
  • activity_trials: mean activity per neuron for each trial
    • shape:n_neurons x n_trials
datacite.yml
Title State-dependent pupil dilation rapidly shifts visual feature representations
Authors Franke,Katrin;Institute for Ophthalmic Research, Tuebingen University, Tuebingen, Germany.
Willeke,Konstantin F.;Institute for Bioinformatics and Medical Informatics, Tuebingen University, Tuebingen, Germany
Ponder,Kayla;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Galdamez,Mario;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Zhou,Na;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Muhammad,Taliah;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Patel,Saumil;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Froudarakis,Emmanouil;Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology Hellas, Heraklion, Greece
Reimer,Jacob;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Sinz,Fabian;Department of Computer Science, Goettingen University, Goettingen, Germany
Tolias,Andreas;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Description Complete dataset for the article "State-dependent pupil dilation rapidly shifts visual feature representations".
License CC-BY (http://creativecommons.org/licenses/by/4.0/)
References Franke, K., Willeke, K.F., Ponder, K., Galdamez, M., Muhammad, T., Patel, S., Froudarakis, E., Reimer, J., Sinz, F., & Tolias, A.S. (2021). Behavioral state tunes mouse vision to ethological features through pupil dilation. bioRxiv. [doi:10.1101/2021.09.03.458870] (IsSupplementTo)
Funding DFG, EXC 2064/1
IARPA, D16PC00003
NIH, R01 EY026927
NIH, T32-EY-002520-37
NSF, 1707400
Carl-Zeiss-Stiftung
Keywords Neuroscience
Systems Neuroscience
Primary visual cortex
Brain state
Behavioral state
Machine learning
Deep neural networks
Resource Type Dataset