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README.md
Dataset Structure
The dotmap scans are provided as .h5 files. They contain the recorded neuronal responses to colored sparse noise stimuli.
The following attributes are present in each individual dataset:
- dot_x_pos: x position of dot for each trial (from 0 to 7)
- shape:
1 x n_trials
- shape:
- dot_y_pos: y position of dot for each trial (from 0 to 4)
- shape:
1 x n_trials
- shape:
- cond_trials: dot intensity of green and UV channel for each trial (in 8-bit)
- shape:
1 x n_trials x n_channels
- shape:
- pupil_trials: mean pupil size for each trial (not present for scans with pupil dilation)
- shape:
1 x n_trials
- shape:
- locomotion_trials: mean locomotion speed for each trial
- shape:
1 x n_trials
- shape:
- activity_trials: mean activity per neuron for each trial
- shape:
n_neurons x n_trials
- shape:
| datacite.yml | |
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| Title | State-dependent pupil dilation rapidly shifts visual feature representations |
| Authors |
Franke,Katrin;Institute for Ophthalmic Research, Tuebingen University, Tuebingen, Germany.
Willeke,Konstantin F.;Institute for Bioinformatics and Medical Informatics, Tuebingen University, Tuebingen, Germany Ponder,Kayla;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US Galdamez,Mario;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US Zhou,Na;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US Muhammad,Taliah;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US Patel,Saumil;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US Froudarakis,Emmanouil;Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology Hellas, Heraklion, Greece Reimer,Jacob;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US Sinz,Fabian;Department of Computer Science, Goettingen University, Goettingen, Germany Tolias,Andreas;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US |
| Description | Complete dataset for the article "State-dependent pupil dilation rapidly shifts visual feature representations". |
| License | CC-BY (http://creativecommons.org/licenses/by/4.0/) |
| References |
Franke, K., Willeke, K.F., Ponder, K., Galdamez, M., Muhammad, T., Patel, S., Froudarakis, E., Reimer, J., Sinz, F., & Tolias, A.S. (2021). Behavioral state tunes mouse vision to ethological features through pupil dilation. bioRxiv. [doi:10.1101/2021.09.03.458870] (IsSupplementTo)
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| Funding |
DFG, EXC 2064/1
IARPA, D16PC00003 NIH, R01 EY026927 NIH, T32-EY-002520-37 NSF, 1707400 Carl-Zeiss-Stiftung |
| Keywords |
Neuroscience
Systems Neuroscience Primary visual cortex Brain state Behavioral state Machine learning Deep neural networks |
| Resource Type |
Dataset |