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dotmap scans
loved_alien 9e958e5442 'dotmap scans/README.md' ändern 2 年 前
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Dotmap_25311_10_27.h5 f680bbaa1e upload all dotmap scans 2 年 前
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README.md 9e958e5442 'dotmap scans/README.md' ändern 2 年 前

README.md

Dataset Structure

The dotmap scans are provided as .h5 files. They contain the recorded neuronal responses to colored sparse noise stimuli.

The following attributes are present in each individual dataset:

  • dot_x_pos: x position of dot for each trial (from 0 to 7)
    • shape:1 x n_trials
  • dot_y_pos: y position of dot for each trial (from 0 to 4)
    • shape:1 x n_trials
  • cond_trials: dot intensity of green and UV channel for each trial (in 8-bit)
    • shape:1 x n_trials x n_channels
  • pupil_trials: mean pupil size for each trial (not present for scans with pupil dilation)
    • shape:1 x n_trials
  • locomotion_trials: mean locomotion speed for each trial
    • shape:1 x n_trials
  • activity_trials: mean activity per neuron for each trial
    • shape:n_neurons x n_trials
datacite.yml
Title State-dependent pupil dilation rapidly shifts visual feature representations
Authors Franke,Katrin;Institute for Ophthalmic Research, Tuebingen University, Tuebingen, Germany.
Willeke,Konstantin F.;Institute for Bioinformatics and Medical Informatics, Tuebingen University, Tuebingen, Germany
Ponder,Kayla;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Galdamez,Mario;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Zhou,Na;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Muhammad,Taliah;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Patel,Saumil;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Froudarakis,Emmanouil;Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology Hellas, Heraklion, Greece
Reimer,Jacob;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Sinz,Fabian;Department of Computer Science, Goettingen University, Goettingen, Germany
Tolias,Andreas;Department of Neuroscience, Baylor College of Medicine, Houston, TX, US
Description Complete dataset for the article "State-dependent pupil dilation rapidly shifts visual feature representations".
License CC-BY (http://creativecommons.org/licenses/by/4.0/)
References Franke, K., Willeke, K.F., Ponder, K., Galdamez, M., Muhammad, T., Patel, S., Froudarakis, E., Reimer, J., Sinz, F., & Tolias, A.S. (2021). Behavioral state tunes mouse vision to ethological features through pupil dilation. bioRxiv. [doi:10.1101/2021.09.03.458870] (IsSupplementTo)
Funding DFG, EXC 2064/1
IARPA, D16PC00003
NIH, R01 EY026927
NIH, T32-EY-002520-37
NSF, 1707400
Carl-Zeiss-Stiftung
Keywords Neuroscience
Systems Neuroscience
Primary visual cortex
Brain state
Behavioral state
Machine learning
Deep neural networks
Resource Type Dataset