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4d_multi-channel_neonatal_brain_mri_atlas
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4D parametrised multi-channel MRI atlas of normal neonatal brain development (v1.0 - will be updated soon)

Branch: master
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4d_multi-cha...
Alena Ulla Uus c737f135b6 v1.1 3 years ago
fitted_4D_channels_common_space ba21ff8fe1 v1.1 3 years ago
fitted_4D_channels_unbiased_space c737f135b6 v1.1 3 years ago
fitted_transformations d9bfd196b9 v1.0 3 years ago
gamma_maps 21d244a50c v1.0 3 years ago
parcellation_maps_05mm b4061b4d38 v1.0 3 years ago
4D_MC_atlas_summary_notations.xlsx f6d3e254d8 v1.0 3 years ago
LICENSE 961e362c6d v1.0 3 years ago
README.md 03db8f2bb6 v1.0 3 years ago

README.md

4D multi-channel neonatal brain altas

This repository contains a 4D parametrized atlas multi-channel atlas of the normal term neonatal brain development during 37-44 weeks PMA presented in (Uus et al., 2021). The atlas was constructed from 170 normal term MRI datasets from the dHCP project.

The atlas includes:

  • 4D fitted structural MRI channels (common 0.75mm and unbiased 0.6mm space): T1w, T2w, T1w/T2w
  • 4D fitted diffusion MRI channels (common 0.75mm and unbiased 0.6mm space): DTI(FA, MD, RD), ODF(ODF, TDI), NODDI(FICVF, FISO, ODI), average DWI, DKI(MK), microFA
  • parcellation maps (M-CRIB-WM-based WM ROIs, high rate change "gamma" ROIs and the original dHCP tissue ROIs)
  • Gompertz model gamma maps (outputs of 4D fitting corresponding to the signal change rate in time)
  • transformations from 37 to 44 weeks PMA timepoints (affine in MIRTK format and nonlinear warps in MRtrix3 format)

In case you found this resource useful please give appropriate credit to the atlas:

Uus, Alena, Irina Grigorescu, Maximilian Pietsch, Dafnis Batalle, Daan Christiaens, Emer Hughes, Jana Hutter, Lucilio Cordero Grande, Anthony N. Price, Jacques-Donald Tournier, Mary A. Rutherford, Serena J. Counsell, Joseph V Hajnal, A. David Edwards, and Maria Deprez. 2021. “Multi-Channel 4D Parametrized Atlas of Macro- and Microstructural Neonatal Brain Development.” Frontiers in Neuroscience 15:721 : https://doi.org/10.3389/fnins.2021.661704