Drangmeister/structured_inhibition_spatial_network_model @ a2034c83a7fbaedfaea53f455925560472c15d71

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Paul Pfeiffer a2034c83a7 prepared notebook for using model fitting with brian2		4 rokov pred
legacy_code	5318284ad3 moved old code basis to legacy code	4 rokov pred
models	8b28da9f74 PRC of Hodkin-Huxley with H-current is as desired. Transfer from notebook to script	4 rokov pred
notebooks	a2034c83a7 prepared notebook for using model fitting with brian2	4 rokov pred
scripts	c9779cf3e6 Aaaaand some more plots	4 rokov pred
.gitignore	0ee4bb0df8 changed location of logging and data	4 rokov pred
README.md	99f3c18c82 Update README.md	4 rokov pred
environment.yml	a2034c83a7 prepared notebook for using model fitting with brian2	4 rokov pred

Paul Pfeiffer a2034c83a7 prepared notebook for using model fitting with brian2

4 rokov pred

legacy_code

5318284ad3 moved old code basis to legacy code

4 rokov pred

models

8b28da9f74 PRC of Hodkin-Huxley with H-current is as desired. Transfer from notebook to script

4 rokov pred

notebooks

a2034c83a7 prepared notebook for using model fitting with brian2

4 rokov pred

scripts

c9779cf3e6 Aaaaand some more plots

4 rokov pred

.gitignore

0ee4bb0df8 changed location of logging and data

4 rokov pred

README.md

99f3c18c82 Update README.md

4 rokov pred

environment.yml

a2034c83a7 prepared notebook for using model fitting with brian2

4 rokov pred

Functional aspects of interneuron morphology in the subiculum

Interneurons in the subiculum have a polar axonal cloud instead of a circular as found in other brain regions. Additionally, pyramidal neurons in the subiculum lack recurrent connections, but they connect via recurrent inhibition. Therefore, inhibition plays a major role in this circuitry and we pose the question, which function the extraordinary axon morphology serves in this setting.

Ressources

How to run the scripts

It is recommended to use Anaconda (https://www.continuum.io/downloads) to create a virtual environment with the necessary dependencies. With anaconda, it is a one button install. Af ter cloning the repository and changing into the root folder, type

conda env create -f environment.yml

This creates an environment called interneuron_polarity, which can be activated via

conda activate interneuron_polarity

If you need additional packages, install them via conda install and update the environment file via

conda env export > environment.yml

To update the existing enviroment

conda-env update -f environment.yml