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prepared notebook for using model fitting with brian2

Paul Pfeiffer 4 年之前
父節點
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a2034c83a7
共有 2 個文件被更改,包括 311 次插入1 次删除
  1. 21 1
      environment.yml
  2. 290 0
      notebooks/2020-04-01-pfeiffer-model-fitting-with-brian.ipynb

+ 21 - 1
environment.yml

@@ -182,9 +182,29 @@ dependencies:
   - zlib=1.2.11=h7b6447c_3
   - zstd=1.3.7=h0b5b093_0
   - pip:
+    - argparse==1.4.0
+    - bayesian-optimization==0.6.0
+    - brian2modelfitting==0.3
+    - cma==2.7.0
+    - coverage==5.0.4
+    - efel==3.0.80
+    - genty==1.3.2
+    - greenlet==0.4.15
+    - joblib==0.14.1
+    - mypy==0.770
+    - mypy-extensions==0.4.3
+    - nevergrad==0.1.2
     - noise==1.2.2
+    - nose-timer==1.0.0
     - numexpr==2.7.1
+    - pyaml==20.3.1
     - pypet==0.4.3
+    - pyyaml==5.3.1
+    - scikit-learn==0.22.2.post1
+    - scikit-optimize==0.7.4
+    - scoop==0.7.1.1
     - tables==3.6.1
-
+    - typed-ast==1.4.1
+    - typing-extensions==3.7.4.1
+prefix: /home/pfeiffer/Applications/miniconda2/envs/interneuron_polarity
 

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+ 290 - 0
notebooks/2020-04-01-pfeiffer-model-fitting-with-brian.ipynb