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moritz 2ef71dc0e9 Dataframe used for hdi over correlation length		4 gadi atpakaļ
legacy_code	5318284ad3 moved old code basis to legacy code	4 gadi atpakaļ
models	8b28da9f74 PRC of Hodkin-Huxley with H-current is as desired. Transfer from notebook to script	4 gadi atpakaļ
notebooks	103d7463d9 calculate overlaps of ellipsoids as preliminary step for optimizing overlap via differential evolution	4 gadi atpakaļ
scripts	2ef71dc0e9 Dataframe used for hdi over correlation length	4 gadi atpakaļ
.gitignore	0ee4bb0df8 changed location of logging and data	4 gadi atpakaļ
README.md	99f3c18c82 Update README.md	4 gadi atpakaļ
environment.yml	a2034c83a7 prepared notebook for using model fitting with brian2	4 gadi atpakaļ

Functional aspects of interneuron morphology in the subiculum

Interneurons in the subiculum have a polar axonal cloud instead of a circular as found in other brain regions. Additionally, pyramidal neurons in the subiculum lack recurrent connections, but they connect via recurrent inhibition. Therefore, inhibition plays a major role in this circuitry and we pose the question, which function the extraordinary axon morphology serves in this setting.

Ressources

How to run the scripts

It is recommended to use Anaconda (https://www.continuum.io/downloads) to create a virtual environment with the necessary dependencies. With anaconda, it is a one button install. Af ter cloning the repository and changing into the root folder, type

conda env create -f environment.yml

This creates an environment called interneuron_polarity, which can be activated via

conda activate interneuron_polarity

If you need additional packages, install them via conda install and update the environment file via

conda env export > environment.yml

To update the existing enviroment

conda-env update -f environment.yml

README.md

Functional aspects of interneuron morphology in the subiculum

Ressources

How to run the scripts