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arefks 71676560e5 sorted and added parallel quantitative value py file 1 month ago
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4Presentation 150a909027 finished first stage poster 2 months ago
Bilder_Luca_BA 61a852543a I added all my images from the thesis as PDFs 6 months ago
Correlation_with_behavior e702eb74fb adjusted code and ran it again 6 months ago
Figures 41077a6c78 [DATALAD] Recorded changes 1 month ago
ImageJ e61376a090 Merge remote-tracking branch 'origin/master' 2 months ago
MaskComparisons 9bcdec0ea4 added overlap percentage csv 7 months ago
Quantitative_outputs 71676560e5 sorted and added parallel quantitative value py file 1 month ago
Tract_Density_Map 3a7f02f1c4 temp 8 months ago
Tract_Density_Map_registered 0013120323 hmmm 2 months ago
Tract_Mask_NIFTI c5875af414 added white matter mask 6 months ago
Tract_Mask_registered 1cd13fc10c added amba regoins to the mix 1 month ago
Tract_Mask_registered_with_allan_regions 1cd13fc10c added amba regoins to the mix 1 month ago
Tract_Mask_tt 8634e48d2c [DATALAD] Recorded changes 7 months ago
Viral_tracing_flipped 2e82796756 added viraltracin 2 mtpl space filp function 8 months ago
behavior_analysis 83bbe1278b merged behavior data with quantitaitve dti values and corrolated between them with corrections 7 months ago
del 71676560e5 sorted and added parallel quantitative value py file 1 month ago
single_AMBA_regions_nifti 1cd13fc10c added amba regoins to the mix 1 month ago
C57BL6_mouse.iso_registerd.nii.gz 45782701c4 updated input and output 10 months ago
Overlap_metrics_of_VT_and_dwi_masks.csv 9bcdec0ea4 added overlap percentage csv 7 months ago
README.md a0f2377f45 I updated the READme file for Outputs 9 months ago
affineTrafo.txt 45782701c4 updated input and output 10 months ago

README.md

Outputs

  • Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
  • Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
  • affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • Nifti_Trakte_V2: These are the updated tracts (NV).
  • Tract_Density: This folder contains the density of each generated tract mask, saved from DSI-Studio.