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2024_Ruthe_SND
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2024_Ruthe_SND
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arefks 8cf7397b76 newly processed, fixed some bugs in code 6 mēneši atpakaļ
..
.ipynb_checkpoints e8e54e0207 current state: code is finished for representation 9 mēneši atpakaļ
AIDAmri @ 8e7f9d3597 13cb663094 added all of the code necessery 9 mēneši atpakaļ
mouse_connectivity e8e54e0207 current state: code is finished for representation 9 mēneši atpakaļ
Big_data_mouse_practical_2020_answer.ipynb e8e54e0207 current state: code is finished for representation 9 mēneši atpakaļ
GetQuantitativeValues.py 8cf7397b76 newly processed, fixed some bugs in code 6 mēneši atpakaļ
README.md 13cb663094 added all of the code necessery 9 mēneši atpakaļ
correlation_between_bahavior_and_DTI.py 8cf7397b76 newly processed, fixed some bugs in code 6 mēneši atpakaļ
correlation_between_bahavior_and_DTI_anovaSpecific.py 132437cf05 final results 6 mēneši atpakaļ
heat_maps_correlation.py 8cf7397b76 newly processed, fixed some bugs in code 6 mēneši atpakaļ
incooparate_behavior_data.py 132437cf05 final results 6 mēneši atpakaļ
mask2MTPL.py 13cb663094 added all of the code necessery 9 mēneši atpakaļ
overlayPlot.py 86fce3a119 current state: code is finished for representation 9 mēneši atpakaļ
plotting_quantitative_dti_values.py 8cf7397b76 newly processed, fixed some bugs in code 6 mēneši atpakaļ
proof_of_modalities.py 9bcdec0ea4 added overlap percentage csv 7 mēneši atpakaļ
register_masks.py 748f48e806 changed the flip in the anat step of the registration, changed it back to before 6 mēneši atpakaļ
remapping_voiting_qc.py 18752865ca changed voitign with script to have additional columns 6 mēneši atpakaļ
statsmodel_training.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations 7 mēneši atpakaļ
transpose_csv.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations 7 mēneši atpakaļ
viralTracing2MTPL.py 2e82796756 added viraltracin 2 mtpl space filp function 8 mēneši atpakaļ

README.md

AIDAmri code

This is the code used to process raw Bruker data and to apply transformations from the drawn masks to each individual subject. Note that this is a subdataset linked to the GitHub page of AIDAmri.

The link to the exact branch of the code which was used for this process is: AIDAmri - SND_Mask_trafu branch.

Example usage of code

root@9c22c56092e5:/aida/DATA/code# python mask2MTPL.py -i /aida/DATA/output/Tract_Density -o /aida/DATA/output/Nifti_Tract_density_registered